Schema for mrnaOrientInfo
  Database: dipOrd1    Primary Table: mrnaOrientInfo    Row Count: 28   Data last updated: 2017-09-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_109940varchar(255) values Reference sequence chromosome or scaffold
chromStart 91int(10) unsigned range Start position in chromosome
chromEnd 1650int(10) unsigned range End position in chromosome
name EU817481varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dipOrd1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_109940911650EU81748110000
585scaffold_109940911650EU81748510000
585scaffold_16874359913063EU817479316000
585scaffold_16874359916227EU81748120000
585scaffold_16874359916958EU8174833220450
585scaffold_16874362016540EU817482314000
585scaffold_16874373016227EU81748520000
585scaffold_16874855416535EU817484317100
585scaffold_168742611126236EU817479016000
585scaffold_168742611126236EU81748100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.