Schema for estOrientInfo
  Database: criGriChoV1    Primary Table: estOrientInfo    Row Count: 12   Data last updated: 2017-04-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 593smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom NW_003613702v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 1125867int(10) unsigned range Start position in chromosome
chromEnd 1125956int(10) unsigned range End position in chromosome
name AF022944varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        criGriChoV1.all_est.qName (via estOrientInfo.name)
      criGriChoV1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
593NW_003613702v111258671125956AF02294400100
592NW_003613904v1951344953354AF02294220000
592NW_003613904v1954785954954AF022941000210
586NW_003614036v1191847192058AF02293800000
586NW_003614036v1192105193027AF022939-10000
586NW_003614036v1192119193004AF022940-10000
590NW_003614171v1748953749059AF02294401000
588NW_003614789v1455312455490AF02294500000
585NW_003618845v11738721106AF18091811000
608NW_003613633v130887843111338FK04167680000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.