Schema for estOrientInfo
  Database: canFam1    Primary Table: estOrientInfo    Row Count: 422,055   Data last updated: 2016-07-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1461smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 114823103int(10) unsigned range Start position in chromosome
chromEnd 114831041int(10) unsigned range End position in chromosome
name AB042265varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam1.all_est.qName (via estOrientInfo.name)
      canFam1.est.qName (via estOrientInfo.name)
      canFam1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1461chr1114823103114831041AB04226530000
740chr192042112620429441AB04226410000
841chr363365604833658380AB04226650000
719chr11768133417681898AJ53689900400
719chr11768206917682585AJ536900001200
736chr11991311619913319AJ5368930010031
768chr12404605324046537AJ53737700000
819chr13068593030686504AJ5369010230470
877chr13836863638369918AJ536902-302000
884chr13922102639221503AJ53689600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.