Schema for estOrientInfo
  Database: tupBel1    Primary Table: estOrientInfo    Row Count: 16,681   Data last updated: 2012-06-12
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_115401.1-243207varchar(255) values Reference sequence chromosome or scaffold
chromStart 133667int(10) unsigned range Start position in chromosome
chromEnd 133824int(10) unsigned range End position in chromosome
name BI975165varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      tupBel1.all_est.qName (via estOrientInfo.name)
      tupBel1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586scaffold_115401.1-243207133667133824BI97516500000
585scaffold_123908.1-1212017212272248BI97516500000
585scaffold_130561.1-523094866848797BI97516500000
587scaffold_131641.1-314154278845278974BI97516300000
587scaffold_131641.1-314154279491279675BI97516400000
586scaffold_137121.1-328252139170139308BI97516600000
585scaffold_143206.1-652535431654442BI97516500000
585scaffold_1604.1-238595129896130026BI97516500000
585scaffold_16604.1-1109020128BI97516500000
585scaffold_100019.1-4878038344093CF52714800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.