Schema for estOrientInfo
  Database: rn5    Primary Table: estOrientInfo    Row Count: 1,118,299   Data last updated: 2016-05-01
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 608smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3092790int(10) unsigned Start position in chromosome
chromEnd 3093181int(10) unsigned End position in chromosome
name AA964125varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rn5.all_est.qName (via estOrientInfo.name)
      rn5.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
608chr130927903093181AA96412500000
610chr133820703382407AA851694000020
611chr134280913428480AA68604700000
611chr134281873428592AA68547700000
611chr134283073428889AA94366500000
611chr134283373428578AA685245000200
611chr134286343428889AA68560000000
611chr134310583431474AA9985780015038
611chr134310813431638AA80017700000
611chr134310863431461AA84909300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.