Schema for estOrientInfo
  Database: rheMac10    Primary Table: estOrientInfo    Row Count: 82,003   Data last updated: 2019-07-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1796smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 158799220int(10) unsigned range Start position in chromosome
chromEnd 158813145int(10) unsigned range End position in chromosome
name AB471888varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rheMac10.all_est.qName (via estOrientInfo.name)
      rheMac10.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1796chr1158799220158813145AB47188830000
1796chr1158799220158813145AB47188940000
1091chr16644548766445585AF08973200000
1328chr19745463997454824AF089889000210
1476chr1116891439116891661AF15945000000
691chr111401796614018126AF07512600000
960chr124925580049256079AF13902700000
1091chr126634975666350042AF07512200000
1165chr127611628976116542AF14888500000
1165chr127614949876150059AF14028700000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.