Schema for xenoRefSeqAli
  Database: melGal1    Primary Table: xenoRefSeqAli    Row Count: 357,605   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 735smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1398int(10) unsigned range Number of bases that match that aren't repeats
misMatches 323int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 89int(10) unsigned range Number of bases inserted in query
tNumInsert 17int(10) unsigned range Number of inserts in target
tBaseInsert 32546int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001363583varchar(255) values Query sequence name
qSize 6452int(10) unsigned range Query sequence size
qStart 166int(10) unsigned range Alignment start position in query
qEnd 1976int(10) unsigned range Alignment end position in query
tName chr10varchar(255) values Target sequence name
tSize 31125776int(10) unsigned range Target sequence size
tStart 19713887int(10) unsigned range Alignment start position in target
tEnd 19748154int(10) unsigned range Alignment end position in target
blockCount 18int(10) unsigned range Number of blocks in alignment
blockSizes 15,181,137,127,80,51,3,124,...longblob   Size of each block
qStarts 166,269,450,587,714,794,845...longblob   Start of each block in query.
tStarts 11377622,11379002,11379691,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      melGal1.all_est.qName (via xenoRefSeqAli.qName)
      melGal1.all_mrna.qName (via xenoRefSeqAli.qName)
      melGal1.xenoMrna.qName (via xenoRefSeqAli.qName)
      melGal1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      melGal1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7351398323002891732546+-NM_00136358364521661976chr103112577619713887197481541815,181,137,127,80,51,3,124,101,119,77,83,103,131,54,3,114,218,166,269,450,587,714,794,845,848,972,1073,1192,1269,1352,1455,1586,1640,1643,1758,11377622,11379002,11379691,11381164,11381732,11381815,11381966,11382547,11400353,11405019,11405310,11405730,11405938,11406328,11 ...
736561080052287269066+-NM_0012778581180211013chr12040651317323277153845,184,107,160,11,34,63,160,21,189,373,480,700,737,788,853,203787978,204051380,204057069,204057274,204057442,204057530,204057582,204057648,
10456627000000+-NM_001363506185715411634chr5625240716041890460418997193,1541,2105074,
585246550036235597+-NM_001031473552188551chr12040651317820137184131,110,21,39,188,338,485,512,204051413,204057068,204057246,204057272,
585453108001944329+-NM_00103261811960570chr120406513125405302955198,150,21,64,128,0,198,348,378,442,204034836,204036608,204038870,204038897,204039598,
585452970012144341+-NM_00110470076373643chr120406513125405302955198,150,21,57,123,73,271,421,463,520,204034836,204036608,204038870,204038909,204039603,
5854371210011244332+-NM_131870157574644chr120406513125405302955198,150,21,61,128,74,272,422,455,516,204034836,204036608,204038870,204038900,204039598,
585436134000034323+-NM_00107903933444791049chr120406513125405302984201,150,91,128,479,680,830,921,204034833,204036608,204038870,204039598,
1098329500437812254052++NM_00137538949985032159chr1518242780102719101052724013135,74,16,53,82,123,132,127,89,66,168,123,90,503,917,991,1007,1060,1142,1286,1418,1545,1634,1700,1889,2069,10271910,10281160,10287907,10287924,10433431,10440491,10462399,10470091,10502949,10521793,10522442,10524116,10527150,
723346116001921864++NM_0582741294102573chr122066326218202848182051743198,180,84,102,300,489,18202848,18203938,18205090,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.