Schema for mrnaOrientInfo
  Database: droYak2    Primary Table: mrnaOrientInfo    Row Count: 901   Data last updated: 2019-06-29
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 144946int(10) unsigned range Start position in chromosome
chromEnd 145322int(10) unsigned range End position in chromosome
name AY232141varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droYak2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr2L144946145322AY23214110000
588chr2L404413404897AY23179110000
597chr2L15864921587488AY23204110000
601chr2L22262122226668AY23212200000
602chr2L22327152233171AY23212200000
602chr2L23555912356329AY23202920000
603chr2L23659112367600AJ86823210000
604chr2L25624632563650AF53200710000
604chr2L25668232567441AY23219630000
605chr2L27489482751793AY23185820000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.