Schema for estOrientInfo
  Database: canFam2    Primary Table: estOrientInfo    Row Count: 427,684   Data last updated: 2016-06-12
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1466smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 115543488int(10) unsigned range Start position in chromosome
chromEnd 115551495int(10) unsigned range End position in chromosome
name AB042265varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam2.all_est.qName (via estOrientInfo.name)
      canFam2.est.qName (via estOrientInfo.name)
      canFam2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1466chr1115543488115551495AB04226530000
740chr192040984420418157AB04226410000
840chr363353478433537116AB04226650000
720chr11779927817799842AJ53689900400
720chr11780001317800529AJ536900001200
737chr12002906820029271AJ5368930010031
769chr12415494924155432AJ53737700000
819chr13074338030743954AJ5369010230470
878chr13841519538416477AJ536902-302000
884chr13926727339267750AJ53689600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.