Schema for all_mrna
  Database: aplCal1    Primary Table: all_mrna    Row Count: 861   Data last updated: 2019-03-26
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1475int(10) unsigned range Number of bases that match that aren't repeats
misMatches 12int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 5int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 4int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName EZ114783varchar(255) values Query sequence name
qSize 1492int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1492int(10) unsigned range Alignment end position in query
tName chrMvarchar(255) values Target sequence name
tSize 14117int(10) unsigned range Target sequence size
tStart 92int(10) unsigned range Alignment start position in target
tEnd 1583int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 4,20,1380,83,longblob   Size of each block
qStarts 0,4,24,1409,longblob   Start of each block in query.
tStarts 92,97,118,1500,longblob   Start of each block in target.

Connected Tables and Joining Fields
        aplCal1.all_est.qName (via all_mrna.qName)
      aplCal1.mrnaOrientInfo.name (via all_mrna.qName)
      aplCal1.xenoRefGene.name (via all_mrna.qName)
      aplCal1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585147512001534+EZ114783149201492chrM1411792158344,20,1380,83,0,4,24,1409,92,97,118,1500,
585134070061567+EZ114664136701362chrM1411745515905139,82,3,14,128,20,5,5,3,13,51,944,70,0,9,91,94,108,237,258,264,270,274,287,338,1292,4551,4561,4644,4648,4663,4791,4811,4816,4821,4824,4839,4891,5835,
58510857000011+EZ114648110021094chrM14117634674392486,606,2,488,6346,6833,
5856504000011+EZ1147296606660chrM1411775998254222,632,6,28,7599,7622,
5851394000000-EZ114549425282425chrM14117875388961143,0,8753,
5856679000000-EZ1145538250676chrM14117875394291676,149,8753,
585116118000044+EZ114698118111180chrM14117109781216157,18,16,17,1121,1,8,26,42,59,10978,10986,11005,11022,11040,
5857359000011-EZ1147477440744chrM1411712273130182714,30,0,714,12273,12988,
5857027000000+EZ1145357154713chrM1411713396141051709,4,13396,
5897933000036527-HM0545287960796scaffold_017845145439055512284575,85,70,66,0,575,660,730,543905,548934,550245,551162,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.