Schema for estOrientInfo
  Database: anoCar2    Primary Table: estOrientInfo    Row Count: 177,795   Data last updated: 2016-06-16
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 4459int(10) unsigned range Start position in chromosome
chromEnd 5233int(10) unsigned range End position in chromosome
name FG752277varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 9smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        anoCar2.all_est.qName (via estOrientInfo.name)
      anoCar2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr144595233FG75227700900
585chr145455510FG75222910000
585chr11410414835FG777572015017
585chr11488215694FG77742800000
585chr17749077961FG66873800000
585chr17749578298FG750258000013
585chr17820279095FG75021000000
585chr17942380849FG712335-10000
585chr17967384002FG671278-30600
585chr18083889496FG67123060000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.