Schema for mrnaOrientInfo
  Database: xenTro7    Primary Table: mrnaOrientInfo    Row Count: 31,701   Data last updated: 2020-09-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom KB021649varchar(255) values Reference sequence chromosome or scaffold
chromStart 27473int(10) unsigned range Start position in chromosome
chromEnd 761927int(10) unsigned range End position in chromosome
name BC159143varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 21smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 42smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      xenTro7.all_mrna.qName (via mrnaOrientInfo.name)
      xenTro7.mgcFullMrna.qName (via mrnaOrientInfo.name)
      xenTro7.mgcGenes.name (via mrnaOrientInfo.name)
      xenTro7.refFlat.name (via mrnaOrientInfo.name)
      xenTro7.refGene.name (via mrnaOrientInfo.name)
      xenTro7.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73KB02164927473761927BC1591430210420
585KB0216493544060812CR8554465190420
585KB0216493691160823BC1582985130360
73KB021649116442150860BC08852224280470
586KB021649180511206093BC124046460300
586KB021649218448248638CU075597260000
73KB021649254345266565BC0614221280400
587KB021649302785310938CR761054524000
587KB021649302785311145BC0753565280470
587KB021649338519341230BC075503123000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.