Schema for xenoRefSeqAli
  Database: xenTro1    Primary Table: xenoRefSeqAli    Row Count: 582,134   Data last updated: 2020-09-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 2041int(10) unsigned Number of bases that match that aren't repeats
misMatches 152int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 15int(10) unsigned Number of inserts in query
qBaseInsert 853int(10) unsigned Number of bases inserted in query
tNumInsert 22int(10) unsigned Number of inserts in target
tBaseInsert 17696int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName NM_001096477varchar(255) Query sequence name
qSize 3091int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 3046int(10) unsigned Alignment end position in query
tName scaffold_1varchar(255) Target sequence name
tSize 7608560int(10) unsigned Target sequence size
tStart 3642int(10) unsigned Alignment start position in target
tEnd 23531int(10) unsigned Alignment end position in target
blockCount 28int(10) unsigned Number of blocks in alignment
blockSizes 100,61,166,134,110,93,50,12...longblob Size of each block
qStarts 0,100,162,328,462,572,665,7...longblob Start of each block in query.
tStarts 7585029,7585132,7585193,759...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      xenTro1.all_est.qName (via xenoRefSeqAli.qName)
      xenTro1.all_mrna.qName (via xenoRefSeqAli.qName)
      xenTro1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      xenTro1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585204115200158532217696+-NM_001096477309103046scaffold_1760856036422353128100,61,166,134,110,93,50,128,85,132,90,104,96,85,192,21,10,61,90,7,14,25,95,22,12,105,34,71,0,100,162,328,462,572,665,715,843,928,1060,1150,1385,1482,1570,1763,1788,1799,1876,1967,1974,1988,2024,2176,2217,2833,2940,2975,7585029,7585132,7585193,7590056,7595413,7597917,7598409,7598922,7600450,7601753,7602116,7602770,7603817,7603920,7604005,7604197, ...
58595426000411991318440+-NM_00103525526541752588scaffold_1760856036572331114109,1,134,105,94,55,132,60,131,97,90,66,57,83,175,284,285,419,524,618,673,823,883,1014,1111,1339,1480,2505,7585249,7585377,7590056,7595413,7597912,7598405,7598923,7600476,7601754,7602116,7602777,7603817,7603958,7604820,
58597023900413061218445+-NM_00104458727872042719scaffold_1760856036572331113107,137,105,94,54,133,60,131,97,90,66,69,66,204,311,448,553,647,701,852,912,1043,1140,1368,1497,2653,7585249,7590053,7595413,7597912,7598405,7598922,7600476,7601754,7602116,7602777,7603817,7603943,7604837,
5928363280066421139588+-NM_03072139825092315scaffold_158196459097340010141521254,69,141,90,174,87,119,2,104,114,90,120,509,665,758,899,1094,1268,1391,1510,1512,1754,2105,2195,950438,951875,953237,954955,964136,965471,968510,968669,969732,983425,988909,991070,
5928363280066421139588+-NM_00135701939785052311scaffold_158196459097340010141521254,69,141,90,174,87,119,2,104,114,90,120,505,661,754,895,1090,1264,1387,1506,1508,1750,2101,2191,950438,951875,953237,954955,964136,965471,968510,968669,969732,983425,988909,991070,
5921814356002616713347437+-NM_0013646373861163857scaffold_1991794310961541101114839138,148,162,78,540,462,12,7,69,36,11,39,6,18,15,15,18,18,8,11,31,14,10,12,31,15,43,41,14,13,13,7,25,21,5,11,10,12,31,16,299,548,710,788,1328,1846,1859,1883,2045,2197,2288,2327,2333,2360,2570,2589,2614,2632,2641,2659,2725,2741,3095,3147,3178,3193 ...783162,785141,823533,824547,828667,829210,829753,829767,829855,830067,830329,830463,830505,830512,830546,831194,831212,831238,83 ...
73636355002358825154+-NR_138063461510112037scaffold_45010666301411199672649159,69,22,128,132,51,228,48,154,1011,1170,1263,1285,1413,1545,1596,1835,1883,99366,110466,110559,135931,306061,350632,805816,860616,925357,
58598423900712861318432+-NM_0010312962625462555scaffold_1760856036622331715114,134,110,89,54,133,60,132,96,90,63,66,15,4,63,46,162,296,406,495,549,700,760,892,988,1216,1345,2016,2032,2492,7585243,7590056,7595413,7597917,7598405,7598922,7600476,7601754,7602117,7602777,7603820,7603946,7604498,7604513,7604835,
5859082350032161217620+-NM_00107562124321321491scaffold_1760856045482331113109,1,134,105,98,51,132,60,131,97,90,66,69,132,241,242,376,481,579,630,780,840,971,1068,1296,1422,7585249,7585377,7590056,7595413,7597912,7598409,7598923,7600476,7601754,7602116,7602777,7603817,7603943,
585561217005458717850+-NM_19957621261461382scaffold_176085604689233178114,123,112,99,111,75,93,51,146,262,385,680,863,992,1067,1331,7585243,7590056,7595402,7598953,7601760,7602132,7602774,7603820,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.