Schema for xenoRefFlat
  Database: hetGla2    Primary Table: xenoRefFlat    Row Count: 536,763   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName zgc:153146varchar(255) Name of gene as it appears in genome browser.
name NM_001045414varchar(255) Name of gene
chrom JH602082varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 16285346int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 16303019int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 16285346int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 16303019int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned Number of exons
exonStarts 16285346,16302959,longblob Exon start positions (or end positions for minus strand item)
exonEnds 16285394,16303019,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hetGla2.xenoMrna.qName (via xenoRefFlat.name)
      hetGla2.xenoRefGene.name (via xenoRefFlat.name)
      hetGla2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
zgc:153146NM_001045414JH602082+16285346163030191628534616303019216285346,16302959,16285394,16303019,
LARS1NM_001102492JH602087-5609648566843756099115668437335609648,5609908,5615967,5616925,5618409,5621147,5623911,5624567,5627071,5628351,5629869,5634471,5635505,5637515,5637527,5638383, ...5609741,5610117,5616100,5617021,5618514,5621256,5624023,5624708,5627212,5628442,5630053,5634535,5635563,5637520,5637738,5638517, ...
LOC100216697NM_001143103JH602054+23854332238544852385433223854485123854332,23854485,
LOC105384905NM_001309140JH602143+6521078658179065210786581790116521078,6528426,6529537,6533765,6537732,6539934,6553715,6555877,6570057,6575639,6581703,6521204,6528542,6529679,6533905,6537810,6540029,6553841,6555927,6570122,6575724,6581790,
hmbox1.LNM_001093483JH602071+23557117236383652355713223638287923557117,23567167,23597887,23603141,23632914,23634655,23636121,23638149,23638320,23557596,23567253,23598000,23603293,23632997,23634751,23636210,23638290,23638365,
ZNF705GNM_001164457JH602261+760989027609850047609,8129,8487,8857,7739,8317,8566,8902,
ikNM_001173724JH602056+334013133341351833401313334135181433401313,33403017,33403095,33403594,33404799,33405137,33405693,33406027,33408016,33409378,33411322,33411599,33413135,33413409,33401361,33403092,33403109,33403654,33404967,33405255,33405762,33406058,33408183,33409489,33411376,33411656,33413224,33413518,
HNF4ANM_001287182JH602065-25361025262168832621688326216883525361025,25460493,25770882,25962607,26216854,25361058,25460517,25770901,25962619,26216883,
VipNM_001313969JH602098-546697154733405468883547333785466971,5467158,5468883,5468888,5469746,5470234,5471327,5473238,5467142,5467243,5468888,5468921,5469880,5470335,5471452,5473340,
Ltc4sNM_001313968JH602046+42670789426724544267078942672454442670789,42672048,42672230,42672371,42670847,42672148,42672301,42672454,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.