Schema for estOrientInfo
  Database: droVir2    Primary Table: estOrientInfo    Row Count: 23,935   Data last updated: 2016-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_10047varchar(255) values Reference sequence chromosome or scaffold
chromStart 823int(10) unsigned range Start position in chromosome
chromEnd 1488int(10) unsigned range End position in chromosome
name CX159259varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droVir2.all_est.qName (via estOrientInfo.name)
      droVir2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_100478231488CX15925900000
585scaffold_100478671488CX15979900000
585scaffold_10241454766CX15936500000
585scaffold_103226096161468CX15922010000
587scaffold_10322380992383201CX15960210000
587scaffold_10322381025383201CX15959310000
585scaffold_10429418730CX15936500000
585scaffold_107239781290CX15936500000
585scaffold_10818369681CX15936500000
585scaffold_10859356668CX15936500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.