Schema for mrnaOrientInfo
  Database: dp3    Primary Table: mrnaOrientInfo    Row Count: 214   Data last updated: 2017-10-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 596smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2varchar(255) values Reference sequence chromosome or scaffold
chromStart 1543007int(10) unsigned range Start position in chromosome
chromEnd 1543773int(10) unsigned range End position in chromosome
name AF025814varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dp3.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
596chr215430071543773AF02581410000
616chr241200474124312EU68527830000
649chr284298438462368JQ43306160000
694chr21434321014344600AM05136310000
705chr21581672315818334AJ61896910000
705chr21581839915826048AJ61897050000
89chr21741629417491030U0317930000
732chr21933218919336310AJ61897350000
740chr22035526220361383AM08602330000
790chr22688634526887492AY66538330000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.