Schema for all_est
  Database: ce6    Primary Table: all_est    Row Count: 395,494   Data last updated: 2016-06-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 321int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 44int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF071378varchar(255) values Query sequence name
qSize 324int(10) unsigned range Query sequence size
qStart 3int(10) unsigned range Alignment start position in query
qEnd 324int(10) unsigned range Alignment end position in query
tName chrIvarchar(255) values Target sequence name
tSize 15072421int(10) unsigned range Target sequence size
tStart 392376int(10) unsigned range Alignment start position in target
tEnd 392741int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 6,315,longblob   Size of each block
qStarts 0,6,longblob   Start of each block in query.
tStarts 392376,392426,longblob   Start of each block in target.

Connected Tables and Joining Fields
        ce6.all_mrna.qName (via all_est.qName)
      ce6.est.qName (via all_est.qName)
      ce6.estOrientInfo.name (via all_est.qName)
      ce6.intronEst.qName (via all_est.qName)
      ce6.refGene.name (via all_est.qName)
      ce6.refSeqAli.qName (via all_est.qName)
      ce6.xenoMrna.qName (via all_est.qName)
      ce6.xenoRefGene.name (via all_est.qName)
      ce6.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58732100000144-AF0713783243324chrI1507242139237639274126,315,0,6,392376,392426,
5873040001124-AF0713803083308chrI15072421392433392741340,166,98,0,41,207,392433,392476,392643,
632242100121015-AF0713592550245chrI15072421618777361880311136,7,5,4,16,17,16,80,9,32,21,10,46,53,58,62,78,95,111,193,202,234,6187773,6187810,6187818,6187824,6187829,6187846,6187864,6187882,6187966,6187976,6188010,
6402092001122-AF0713602280212chrI1507242173000647300277413,70,42,86,16,29,99,142,7300064,7300078,7300149,7300191,
693287200001378+AF0713632890289chrI15072421141900471419071426,283,0,6,14190047,14190431,
6933033000055-AF0713613225311chrI15072421141904591419077064,12,24,71,118,77,11,15,27,51,122,240,14190459,14190464,14190477,14190502,14190574,14190693,
63523550034397-AF0713772724248chrII152793236588130658846768,14,42,51,14,111,24,33,49,92,143,157,6588130,6588138,6588202,6588244,6588296,6588356,
6352394000044+AF07139625411254chrII1527932366051896605436565,100,28,12,38,11,76,176,204,216,6605189,6605255,6605356,6605385,6605398,
63923100038561-AF07138328949288chrII152793237168310716860274,22,17,23,27,31,107,1,5,32,49,73,102,133,7168310,7168315,7168347,7168365,7168388,7168416,7168495,
6441110000000+AF07137114735146chrII15279323775672777568381111,35,7756727,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.