Schema for estOrientInfo
  Database: caeJap1    Primary Table: estOrientInfo    Row Count: 33,721   Data last updated: 2016-05-28
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 99841int(10) unsigned range Start position in chromosome
chromEnd 100330int(10) unsigned range End position in chromosome
name DV018600varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        caeJap1.all_est.qName (via estOrientInfo.name)
      caeJap1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrUn99841100330DV01860000000
589chrUn566141569269DV01849730000
591chrUn877949878580DV01850519000
609chrUn32536683254294DV01850400000
619chrUn45870214587313DV01867801000
625chrUn53067295307253DV018592124000
625chrUn53306325331449DV018579100240
625chrUn53397875340662DV018579100240
627chrUn55356185536036DV018664110110
627chrUn55356185536227DV01862510090

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.