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Database: bosTau9 Primary Table: all_mrna Row Count: 21,209   Data last updated: 2019-05-17
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 589 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 1979 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 10 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 2 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 26306 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | BC114143 | varchar(255) | values | Query sequence name |
qSize | 2700 | int(10) unsigned | range | Query sequence size |
qStart | 547 | int(10) unsigned | range | Alignment start position in query |
qEnd | 2536 | int(10) unsigned | range | Alignment end position in query |
tName | chr1 | varchar(255) | values | Target sequence name |
tSize | 158534110 | int(10) unsigned | range | Target sequence size |
tStart | 626200 | int(10) unsigned | range | Alignment start position in target |
tEnd | 654495 | int(10) unsigned | range | Alignment end position in target |
blockCount | 3 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 271,120,1598, | longblob | | Size of each block |
qStarts | 547,818,938, | longblob | | Start of each block in query. |
tStarts | 626200,645833,652897, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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589 | 1979 | 10 | 0 | 0 | 0 | 0 | 2 | 26306 | + | BC114143 | 2700 | 547 | 2536 | chr1 | 158534110 | 626200 | 654495 | 3 | 271,120,1598, | 547,818,938, | 626200,645833,652897, |
592 | 2273 | 0 | 0 | 0 | 0 | 0 | 4 | 8929 | + | BC103185 | 2342 | 1 | 2274 | chr1 | 158534110 | 991022 | 1002224 | 5 | 167,174,160,1726,46, | 1,168,342,502,2228, | 991022,994378,997108,1000451,1002178, |
592 | 2251 | 2 | 0 | 0 | 0 | 0 | 3 | 8928 | + | BT030515 | 2253 | 0 | 2253 | chr1 | 158534110 | 991041 | 1002222 | 4 | 148,174,160,1771, | 0,148,322,482, | 991041,994378,997108,1000451, |
592 | 795 | 1 | 0 | 0 | 0 | 0 | 2 | 5700 | + | BC112873 | 909 | 1 | 797 | chr1 | 158534110 | 1040522 | 1047018 | 3 | 72,95,629, | 1,73,168, | 1040522,1041573,1046389, |
593 | 1012 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | - | BC110185 | 1118 | 2 | 1021 | chr1 | 158534110 | 1099124 | 1100143 | 1 | 1019, | 97, | 1099124, |
593 | 522 | 0 | 0 | 0 | 0 | 0 | 3 | 14912 | - | BC146134 | 539 | 1 | 523 | chr1 | 158534110 | 1102878 | 1118312 | 4 | 183,178,99,62, | 16,199,377,476, | 1102878,1105542,1112102,1118250, |
593 | 779 | 0 | 0 | 0 | 0 | 0 | 1 | 7029 | - | BC111662 | 794 | 1 | 780 | chr1 | 158534110 | 1123940 | 1131748 | 2 | 673,106, | 14,687, | 1123940,1131642, |
74 | 889 | 0 | 0 | 0 | 0 | 0 | 2 | 63463 | - | BC102978 | 914 | 1 | 890 | chr1 | 158534110 | 1390814 | 1455166 | 3 | 563,140,186, | 24,587,727, | 1390814,1407056,1454980, |
595 | 622 | 4 | 0 | 0 | 0 | 0 | 2 | 3 | - | S72877 | 626 | 0 | 626 | chr1 | 158534110 | 1430402 | 1431031 | 3 | 363,3,260, | 0,363,366, | 1430402,1430767,1430771, |
597 | 736 | 4 | 0 | 0 | 0 | 0 | 6 | 6619 | + | M18753 | 779 | 39 | 779 | chr1 | 158534110 | 1643679 | 1651038 | 7 | 66,51,111,130,113,87,182, | 39,105,156,267,397,510,597, | 1643679,1645081,1646078,1648342,1649154,1650492,1650856, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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