Schema for estOrientInfo
  Database: aplCal1    Primary Table: estOrientInfo    Row Count: 302,133   Data last updated: 2017-07-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrMvarchar(255) values Reference sequence chromosome or scaffold
chromStart 74int(10) unsigned range Start position in chromosome
chromEnd 305int(10) unsigned range End position in chromosome
name BF708199varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        aplCal1.all_est.qName (via estOrientInfo.name)
      aplCal1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrM74305BF70819901000
585chrM97719BF70766201000
585chrM97757BF70783800000
585chrM126736BF70777200000
585chrM129802BF70766900000
585chrM12161583BF70791800000
585chrM16762250BF70808600000
585chrM16772067BF70815200000
585chrM16882001BF70817200000
585chrM16892081BF70824900000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.