Schema for all_est
  Database: oreNil2    Primary Table: all_est    Row Count: 129,732   Data last updated: 2016-05-25
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 149int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 16int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 4int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 6int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AI001486varchar(255) values Query sequence name
qSize 171int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 171int(10) unsigned range Alignment end position in query
tName AERX01074241-1varchar(255) values Target sequence name
tSize 2925int(10) unsigned range Target sequence size
tStart 2341int(10) unsigned range Alignment start position in target
tEnd 2514int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 137,16,8,6,longblob   Size of each block
qStarts 0,138,155,165,longblob   Start of each block in query.
tStarts 2341,2478,2496,2508,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      oreNil2.all_mrna.qName (via all_est.qName)
      oreNil2.estOrientInfo.name (via all_est.qName)
      oreNil2.intronEst.qName (via all_est.qName)
      oreNil2.refGene.name (via all_est.qName)
      oreNil2.refSeqAli.qName (via all_est.qName)
      oreNil2.xenoRefGene.name (via all_est.qName)
      oreNil2.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58514911613426+AI0014861710171AERX01074241-12925234125144137,16,8,6,0,138,155,165,2341,2478,2496,2508,
58514911613426+AI0014861710171AERX01074242-12925234125144137,16,8,6,0,138,155,165,2341,2478,2496,2508,
5948901912325-AI0016541230112GL831181-1421558612558811255995416,57,16,20,11,29,86,103,1255881,1255901,1255959,1255975,
59123906603433+AI00158433410319GL831184-1404861983145183175974,198,26,50,12,4,11,10,15,213,240,292,304,308,831451,831455,831654,831680,831730,831743,831748,
59116731900056-AI0015851890189GL831184-14048619832380832575620,3,18,7,136,5,0,20,23,41,48,184,832380,832402,832406,832425,832433,832570,
60311542360033+AI0017071880148GL831184-140486192475873247602449,104,31,4,0,9,113,144,2475873,2475883,2475988,2476020,
6032015401100-AI0017061471389GL831184-1404861924763532476428253,22,58,112,2476353,2476406,
6016205301122+AI0017091358124GL831204-1345007122043462204463420,16,60,19,8,29,45,105,2204346,2204366,2204383,2204444,
60191038000133-AI0017081290129GL831204-1345007122048742205036211,118,0,11,2204874,2204918,
60532863060011+AI00154443010380GL831204-13450071263614926365202174,196,10,184,2636149,2636324,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.