Schema for all_mrna
  Database: myoLuc2    Primary Table: all_mrna    Row Count: 41   Data last updated: 2017-09-09
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 449int(10) unsigned range Number of bases that match that aren't repeats
misMatches 20int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 363int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName HM134936varchar(255) values Query sequence name
qSize 1145int(10) unsigned range Query sequence size
qStart 662int(10) unsigned range Alignment start position in query
qEnd 1131int(10) unsigned range Alignment end position in query
tName AAPE02063704varchar(255) values Target sequence name
tSize 15823int(10) unsigned range Target sequence size
tStart 336int(10) unsigned range Alignment start position in target
tEnd 1168int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 10,304,155,longblob   Size of each block
qStarts 662,672,976,longblob   Start of each block in query.
tStarts 336,347,1013,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      myoLuc2.mrnaOrientInfo.name (via all_mrna.qName)
      myoLuc2.xenoMrna.qName (via all_mrna.qName)
      myoLuc2.xenoRefGene.name (via all_mrna.qName)
      myoLuc2.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854492000002363+HM13493611456621131AAPE02063704158233361168310,304,155,662,672,976,336,347,1013,
585260003002229+EU0447192813266AAPE02071542574210981590322,172,69,3,25,197,1098,1200,1521,
9036544000013559-KJ0100836580658GL4297676499020541689547416937642111,547,0,111,41689547,41693217,
9036534010013559-KJ0100846580658GL4297676499020541689547416937642111,547,0,111,41689547,41693217,
9036544000013559-KJ0100856580658GL4297676499020541689547416937642111,547,0,111,41689547,41693217,
8076372000000-KF9064476390639GL4297693286325429133829291344681639,0,29133829,
8076381000000-KF9064486390639GL4297693286325429133829291344681639,0,29133829,
8076344010000-KF9064496390639GL4297693286325429133829291344681639,0,29133829,
6838241000043894-GQ2412488250825GL429775185792171285226312856982542,240,166,169,208,0,42,282,448,617,12852263,12853131,12853477,12854970,12856774,
62338520000312811+KJ4204143870387GL4297811527482649978355011033470,165,85,67,0,70,235,320,4997835,5006544,5008934,5010966,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.