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Database: myoLuc2 Primary Table: all_mrna Row Count: 41   Data last updated: 2017-09-09
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 449 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 20 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 2 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 363 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | HM134936 | varchar(255) | values | Query sequence name |
qSize | 1145 | int(10) unsigned | range | Query sequence size |
qStart | 662 | int(10) unsigned | range | Alignment start position in query |
qEnd | 1131 | int(10) unsigned | range | Alignment end position in query |
tName | AAPE02063704 | varchar(255) | values | Target sequence name |
tSize | 15823 | int(10) unsigned | range | Target sequence size |
tStart | 336 | int(10) unsigned | range | Alignment start position in target |
tEnd | 1168 | int(10) unsigned | range | Alignment end position in target |
blockCount | 3 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 10,304,155, | longblob | | Size of each block |
qStarts | 662,672,976, | longblob | | Start of each block in query. |
tStarts | 336,347,1013, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 449 | 20 | 0 | 0 | 0 | 0 | 2 | 363 | + | HM134936 | 1145 | 662 | 1131 | AAPE02063704 | 15823 | 336 | 1168 | 3 | 10,304,155, | 662,672,976, | 336,347,1013, |
585 | 260 | 0 | 0 | 3 | 0 | 0 | 2 | 229 | + | EU044719 | 281 | 3 | 266 | AAPE02071542 | 5742 | 1098 | 1590 | 3 | 22,172,69, | 3,25,197, | 1098,1200,1521, |
903 | 654 | 4 | 0 | 0 | 0 | 0 | 1 | 3559 | - | KJ010083 | 658 | 0 | 658 | GL429767 | 64990205 | 41689547 | 41693764 | 2 | 111,547, | 0,111, | 41689547,41693217, |
903 | 653 | 4 | 0 | 1 | 0 | 0 | 1 | 3559 | - | KJ010084 | 658 | 0 | 658 | GL429767 | 64990205 | 41689547 | 41693764 | 2 | 111,547, | 0,111, | 41689547,41693217, |
903 | 654 | 4 | 0 | 0 | 0 | 0 | 1 | 3559 | - | KJ010085 | 658 | 0 | 658 | GL429767 | 64990205 | 41689547 | 41693764 | 2 | 111,547, | 0,111, | 41689547,41693217, |
807 | 637 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | - | KF906447 | 639 | 0 | 639 | GL429769 | 32863254 | 29133829 | 29134468 | 1 | 639, | 0, | 29133829, |
807 | 638 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | KF906448 | 639 | 0 | 639 | GL429769 | 32863254 | 29133829 | 29134468 | 1 | 639, | 0, | 29133829, |
807 | 634 | 4 | 0 | 1 | 0 | 0 | 0 | 0 | - | KF906449 | 639 | 0 | 639 | GL429769 | 32863254 | 29133829 | 29134468 | 1 | 639, | 0, | 29133829, |
683 | 824 | 1 | 0 | 0 | 0 | 0 | 4 | 3894 | - | GQ241248 | 825 | 0 | 825 | GL429775 | 18579217 | 12852263 | 12856982 | 5 | 42,240,166,169,208, | 0,42,282,448,617, | 12852263,12853131,12853477,12854970,12856774, |
623 | 385 | 2 | 0 | 0 | 0 | 0 | 3 | 12811 | + | KJ420414 | 387 | 0 | 387 | GL429781 | 15274826 | 4997835 | 5011033 | 4 | 70,165,85,67, | 0,70,235,320, | 4997835,5006544,5008934,5010966, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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