Schema for xenoRefSeqAli
  Database: droSim1    Primary Table: xenoRefSeqAli    Row Count: 385,171   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 4475int(10) unsigned range Number of bases that match that aren't repeats
misMatches 274int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 26int(10) unsigned range Number of 'N' bases
qNumInsert 10int(10) unsigned range Number of inserts in query
qBaseInsert 299int(10) unsigned range Number of bases inserted in query
tNumInsert 15int(10) unsigned range Number of inserts in target
tBaseInsert 3660int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_078715varchar(255) values Query sequence name
qSize 5248int(10) unsigned range Query sequence size
qStart 1int(10) unsigned range Alignment start position in query
qEnd 5075int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 22036055int(10) unsigned range Target sequence size
tStart 16569int(10) unsigned range Alignment start position in target
tEnd 25004int(10) unsigned range Alignment end position in target
blockCount 20int(10) unsigned range Number of blocks in alignment
blockSizes 35,117,142,160,779,1192,106...longblob   Size of each block
qStarts 1,36,168,310,470,1249,2441,...longblob   Start of each block in query.
tStarts 22011051,22011087,22011211,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        droSim1.all_est.qName (via xenoRefSeqAli.qName)
      droSim1.all_mrna.qName (via xenoRefSeqAli.qName)
      droSim1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droSim1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droSim1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585447527402610299153660+-NM_078715524815075chr2L2203605516569250042035,117,142,160,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,1,36,168,310,470,1249,2441,2547,3190,3633,3742,4023,4148,4328,4493,4570,4772,4828,4841,4949,22011051,22011087,22011211,22012354,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22 ...
585461228002610299163517+-NM_164349539115218chr2L2203605516569250042135,117,142,143,160,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,1,36,168,310,453,613,1392,2584,2690,3333,3776,3885,4166,4291,4471,4636,4713,4915,4971,4984,5092,22011051,22011087,22011211,22011438,22012354,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22 ...
585435425702610505143800+-NM_001258872531505142chr2L2203605516569250061937,117,162,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,375,537,1316,2508,2614,3257,3700,3809,4090,4215,4395,4560,4637,4839,4895,4908,5016,22011049,22011087,22012352,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22018946,22 ...
585435325702610370143801+-NM_001258873517905006chr2L2203605516569250061937,117,161,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,240,401,1180,2372,2478,3121,3564,3673,3954,4079,4259,4424,4501,4703,4759,4772,4880,22011049,22011087,22012353,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22018946,22 ...
585447927402611438153658+-NM_001258874539005217chr2L2203605516569250062037,117,142,162,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,169,450,612,1391,2583,2689,3332,3775,3884,4165,4290,4470,4635,4712,4914,4970,4983,5091,22011049,22011087,22011211,22012352,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22 ...
585461628102611432163514+-NM_001258875552805355chr2L2203605516569250062137,117,142,144,162,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,169,311,588,750,1529,2721,2827,3470,3913,4022,4303,4428,4608,4773,4850,5052,5108,5121,5229,22011049,22011087,22011211,22011438,22012352,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22 ...
585437526902611438143767+-NM_001272858528105108chr2L2203605516569250061937,117,142,162,779,1192,106,643,443,280,103,61,145,61,153,55,12,53,126,0,37,169,450,612,1391,2583,2689,3332,3775,4056,4181,4361,4526,4603,4805,4861,4874,4982,22011049,22011087,22011211,22012352,22013912,22014749,22015998,22016669,22017384,22018261,22018566,22018708,22018779,22018946,22 ...
585432225902611375143830+-NM_164348515504982chr2L2203605516569250061937,117,132,779,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,240,377,1156,2348,2454,3097,3540,3649,3930,4055,4235,4400,4477,4679,4735,4748,4856,22011049,22011087,22012353,22013912,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22018946,22 ...
585444827602611307153687+-NM_164350523005057chr2L2203605516569250062037,117,142,131,781,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,169,311,450,1231,2423,2529,3172,3615,3724,4005,4130,4310,4475,4552,4754,4810,4823,4931,22011049,22011087,22011211,22012354,22013910,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22 ...
585444327602611307153692+-NM_164351522505052chr2L2203605516569250062037,117,142,126,781,1192,106,643,443,109,280,103,61,145,61,153,55,12,53,126,0,37,169,311,445,1226,2418,2524,3167,3610,3719,4000,4125,4305,4470,4547,4749,4805,4818,4926,22011049,22011087,22011211,22012359,22013910,22014749,22015998,22016669,22017384,22018089,22018261,22018566,22018708,22018779,22 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.