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Database: criGriChoV2 Primary Table: all_mrna Row Count: 71,704   Data last updated: 2018-10-31
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 589 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 3503 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 1 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 1 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 4 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 5306 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | JI872642 | varchar(255) | values | Query sequence name |
qSize | 3515 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 3504 | int(10) unsigned | range | Alignment end position in query |
tName | LT883664v1 | varchar(255) | values | Target sequence name |
tSize | 224834208 | int(10) unsigned | range | Target sequence size |
tStart | 593161 | int(10) unsigned | range | Alignment start position in target |
tEnd | 601970 | int(10) unsigned | range | Alignment end position in target |
blockCount | 6 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 227,74,77,116,2946,63, | longblob | | Size of each block |
qStarts | 0,227,301,378,494,3441, | longblob | | Start of each block in query. |
tStarts | 593161,594800,596775,597919... | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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589 | 3503 | 0 | 0 | 0 | 1 | 1 | 4 | 5306 | + | JI872642 | 3515 | 0 | 3504 | LT883664v1 | 224834208 | 593161 | 601970 | 6 | 227,74,77,116,2946,63, | 0,227,301,378,494,3441, | 593161,594800,596775,597919,598961,601907, |
589 | 3500 | 0 | 0 | 0 | 0 | 0 | 4 | 5306 | + | JP058409 | 3510 | 0 | 3500 | LT883664v1 | 224834208 | 593164 | 601970 | 5 | 224,74,77,116,3009, | 0,224,298,375,491, | 593164,594800,596775,597919,598961, |
589 | 538 | 2 | 0 | 0 | 4 | 4 | 0 | 0 | + | JI890776 | 545 | 0 | 544 | LT883664v1 | 224834208 | 594874 | 595414 | 5 | 34,9,4,323,170, | 0,35,45,50,374, | 594874,594908,594917,594921,595244, |
589 | 538 | 2 | 0 | 0 | 4 | 4 | 0 | 0 | + | JP064914 | 545 | 0 | 544 | LT883664v1 | 224834208 | 594874 | 595414 | 5 | 34,9,4,323,170, | 0,35,45,50,374, | 594874,594908,594917,594921,595244, |
589 | 601 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | JI881741 | 601 | 0 | 601 | LT883664v1 | 224834208 | 595987 | 596588 | 1 | 601, | 0, | 595987, |
589 | 601 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | JP053516 | 601 | 0 | 601 | LT883664v1 | 224834208 | 595987 | 596588 | 1 | 601, | 0, | 595987, |
590 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | KC654125 | 30 | 0 | 30 | LT883664v1 | 224834208 | 727583 | 727613 | 1 | 30, | 0, | 727583, |
73 | 1339 | 0 | 0 | 0 | 2 | 2 | 6 | 28832 | - | JI862564 | 1341 | 0 | 1341 | LT883664v1 | 224834208 | 907716 | 937887 | 9 | 131,4,374,334,107,152,191,34,12, | 0,132,136,510,844,951,1103,1294,1329, | 907716,907847,907852,913886,914517,924998,935738,937841,937875, |
73 | 1339 | 0 | 0 | 0 | 1 | 1 | 6 | 28832 | - | JP039784 | 1340 | 0 | 1340 | LT883664v1 | 224834208 | 907716 | 937887 | 8 | 131,4,374,334,107,152,191,46, | 0,132,136,510,844,951,1103,1294, | 907716,907847,907852,913886,914517,924998,935738,937841, |
591 | 512 | 5 | 0 | 0 | 0 | 0 | 1 | 1 | - | JI867406 | 517 | 0 | 517 | LT883664v1 | 224834208 | 910216 | 910734 | 2 | 491,26, | 0,491, | 910216,910708, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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