Schema for mrnaOrientInfo
  Database: rn3    Primary Table: mrnaOrientInfo    Row Count: 144,627   Data last updated: 2020-08-23
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 29100int(10) unsigned range Start position in chromosome
chromEnd 29130int(10) unsigned range End position in chromosome
name DQ763579varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      rn3.all_mrna.qName (via mrnaOrientInfo.name)
      rn3.dupSpMrna.dupMrnaID (via mrnaOrientInfo.name)
      rn3.dupSpMrna.mrnaID (via mrnaOrientInfo.name)
      rn3.kgXref.refseq (via mrnaOrientInfo.name)
      rn3.knownToRefSeq.value (via mrnaOrientInfo.name)
      rn3.mgcFullMrna.qName (via mrnaOrientInfo.name)
      rn3.mgcGenes.name (via mrnaOrientInfo.name)
      rn3.mrnaRefseq.mrna (via mrnaOrientInfo.name)
      rn3.mrnaRefseq.refseq (via mrnaOrientInfo.name)
      rn3.refFlat.name (via mrnaOrientInfo.name)
      rn3.refGene.name (via mrnaOrientInfo.name)
      rn3.refSeqAli.qName (via mrnaOrientInfo.name)
      rn3.spMrna.mrnaID (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr12910029130DQ76357900000
585chr14164541675DQ76357900000
585chr1128612128873DQ25591000000
586chr1226886226916DQ76357900000
586chr1228276228306DQ76357900000
586chr1234634235312FQ226869016000
586chr1234634235312FQ232372017000
587chr1387210387240DQ74224900000
589chr1551903551933DQ61797900000
589chr1556699556786U2547800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.