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Database: xenTro2 Primary Table: all_est Row Count: 1,386,874   Data last updated: 2016-04-24
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | description |
bin | 585 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
matches | 67 | int(10) unsigned | Number of bases that match that aren't repeats |
misMatches | 0 | int(10) unsigned | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | Number of bases inserted in target |
strand | - | char(2) | + or - for strand. First character query, second target (optional) |
qName | AL958091 | varchar(255) | Query sequence name |
qSize | 397 | int(10) unsigned | Query sequence size |
qStart | 0 | int(10) unsigned | Alignment start position in query |
qEnd | 67 | int(10) unsigned | Alignment end position in query |
tName | scaffold_1 | varchar(255) | Target sequence name |
tSize | 7817814 | int(10) unsigned | Target sequence size |
tStart | 63 | int(10) unsigned | Alignment start position in target |
tEnd | 130 | int(10) unsigned | Alignment end position in target |
blockCount | 1 | int(10) unsigned | Number of blocks in alignment |
blockSizes | 67, | longblob | Size of each block |
qStarts | 330, | longblob | Start of each block in query. |
tStarts | 63, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 67 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AL958091 | 397 | 0 | 67 | scaffold_1 | 7817814 | 63 | 130 | 1 | 67, | 330, | 63, |
585 | 64 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | - | AL880669 | 152 | 0 | 64 | scaffold_1 | 7817814 | 64 | 129 | 2 | 32,32, | 88,120, | 64,97, |
585 | 63 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AL886273 | 410 | 0 | 63 | scaffold_1 | 7817814 | 65 | 128 | 1 | 63, | 347, | 65, |
585 | 67 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AL958091 | 397 | 0 | 67 | scaffold_1 | 7817814 | 635 | 702 | 1 | 67, | 330, | 635, |
585 | 64 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | - | AL880669 | 152 | 0 | 64 | scaffold_1 | 7817814 | 636 | 701 | 2 | 32,32, | 88,120, | 636,669, |
585 | 63 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AL886273 | 410 | 0 | 63 | scaffold_1 | 7817814 | 637 | 700 | 1 | 63, | 347, | 637, |
585 | 454 | 1 | 0 | 0 | 0 | 0 | 2 | 6851 | + | AL778536 | 539 | 84 | 539 | scaffold_1 | 7817814 | 17461 | 24767 | 3 | 97,101,257, | 84,181,282, | 17461,20068,24510, |
585 | 643 | 3 | 0 | 0 | 1 | 1 | 3 | 4343 | + | AL594307 | 651 | 4 | 651 | scaffold_1 | 7817814 | 20090 | 25079 | 5 | 79,535,14,4,14, | 4,83,618,633,637, | 20090,24510,25046,25060,25065, |
585 | 799 | 5 | 31 | 0 | 1 | 2 | 0 | 0 | + | AL879855 | 837 | 0 | 837 | scaffold_1 | 7817814 | 57447 | 58282 | 2 | 805,30, | 0,807, | 57447,58252, |
585 | 646 | 1 | 0 | 0 | 0 | 0 | 6 | 14996 | - | AL854817 | 647 | 0 | 647 | scaffold_1 | 7817814 | 75954 | 91597 | 7 | 20,87,97,130,122,43,148, | 0,20,107,204,334,456,499, | 75954,76176,76539,86918,87798,91226,91449, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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