Schema for mrnaOrientInfo
  Database: rheMac2    Primary Table: mrnaOrientInfo    Row Count: 379,108   Data last updated: 2016-02-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 592smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 1031232int(10) unsigned range Start position in chromosome
chromEnd 1047037int(10) unsigned range End position in chromosome
name DQ147993varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      rheMac2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
592chr110312321047037DQ14799320000
617chr142576604271421FN39158450000
621chr148438954844303DQ14810900000
628chr156397415646237DQ85109470000
667chr11076949910775508DQ14803610000
83chr11087824810883223AY06598330000
682chr11278478612785215DQ1480260220460
687chr11347367413474598AY36982100000
729chr11892970218959900DQ4804341300260
737chr12004398420044221DQ148051024000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.