Schema for mrnaOrientInfo
  Database: panTro4    Primary Table: mrnaOrientInfo    Row Count: 6,724   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 592smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 989518int(10) unsigned range Start position in chromosome
chromEnd 1023544int(10) unsigned range End position in chromosome
name AK305466varchar(255) values Accession of EST
intronOrientation 9smallint(6) range Orientation of introns with respect to EST
sizePolyA 18smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      panTro4.all_mrna.qName (via mrnaOrientInfo.name)
      panTro4.refFlat.name (via mrnaOrientInfo.name)
      panTro4.refGene.name (via mrnaOrientInfo.name)
      panTro4.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
592chr19895181023544AK305466918000
592chr19895241000714AK306029744000
593chr110887011088790FZ42713700000
74chr111681761187765AK306358417000
594chr111980091202485AF03816580000
594chr112233081228753AK305957316000
594chr112233081228753AK306018322000
594chr112440801251204AK3055261115000
594chr112449661251807AY665280130000
594chr112609221266300AK306494315200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.