Schema for all_mrna
  Database: musFur1    Primary Table: all_mrna    Row Count: 118,076   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 673int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 138int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 2077int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName JR782665varchar(255) values Query sequence name
qSize 818int(10) unsigned range Query sequence size
qStart 7int(10) unsigned range Alignment start position in query
qEnd 818int(10) unsigned range Alignment end position in query
tName AEYP01108159varchar(255) values Target sequence name
tSize 42269int(10) unsigned range Target sequence size
tStart 14476int(10) unsigned range Alignment start position in target
tEnd 17364int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 91,419,115,63,43,80,longblob   Size of each block
qStarts 0,91,510,625,688,731,longblob   Start of each block in query.
tStarts 14476,14756,15561,16758,171...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      musFur1.all_est.qName (via all_mrna.qName)
      musFur1.mrnaOrientInfo.name (via all_mrna.qName)
      musFur1.refGene.name (via all_mrna.qName)
      musFur1.refSeqAli.qName (via all_mrna.qName)
      musFur1.xenoMrna.qName (via all_mrna.qName)
      musFur1.xenoRefGene.name (via all_mrna.qName)
      musFur1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585673013800052077-JR7826658187818AEYP01108159422691447617364691,419,115,63,43,80,0,91,510,625,688,731,14476,14756,15561,16758,17148,17284,
5853900470001386-EZ5016444370437AEYP011081594226914765155882410,27,0,410,14765,15561,
58553704700021468-JP0128625840584AEYP011081594226914768168203407,115,62,0,407,522,14768,15561,16758,
5852110001531414-EZ4932932160216AEYP01108159422691556017185487,24,63,37,0,92,116,179,15560,15652,16758,17148,
5858910007951863-JR7810249000900AEYP011081594226919265220191230,4,60,74,106,5,311,13,77,86,74,51,0,33,38,98,173,279,285,597,611,689,775,849,19265,19296,19300,19361,19435,20147,20152,20463,20476,20553,21012,21968,
585736000002979-JP0128617410736AEYP011081594226919342210573199,492,45,5,204,696,19342,20147,21012,
5852030000000-EZ5001652030203AEYP011081594226920283204861203,0,20283,
5854120004431846-JR7924694171417AEYP01108159422692039322651812,6,6,68,4,149,74,93,0,12,19,26,95,100,249,323,20393,20406,20412,20418,20486,20490,21012,22558,
58537200091541850-JR7843183881388AEYP011081594226920407226291314,22,29,18,21,6,8,19,48,46,74,30,37,0,15,38,68,87,109,116,125,145,193,239,313,350,20407,20421,20443,20472,20490,20511,20517,20525,20544,20593,21012,22558,22592,
5853931900111103-JR7874084531414AEYP01108526246601523915754311,311,90,39,51,362,15239,15250,15664,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.