Schema for xenoEst
  Database: hg19    Primary Table: xenoEst    Row Count: 44,786,748   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 41int(10) unsigned Number of bases that match that aren't repeats
misMatches 10int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand -+char(2) + or - for strand. First character query, second target (optional)
qName AA542579varchar(255) Query sequence name
qSize 418int(10) unsigned Query sequence size
qStart 367int(10) unsigned Alignment start position in query
qEnd 418int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 249250621int(10) unsigned Target sequence size
tStart 13003int(10) unsigned Alignment start position in target
tEnd 13054int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 51,longblob Size of each block
qStarts 0,longblob Start of each block in query.
tStarts 13003,longblob Start of each block in target.

Connected Tables and Joining Fields
        hg19.all_est.qName (via xenoEst.qName)
      hg19.all_mrna.qName (via xenoEst.qName)
      hg19.refGene.name (via xenoEst.qName)
      hg19.refSeqAli.qName (via xenoEst.qName)
      hg19.xenoMrna.qName (via xenoEst.qName)
      hg19.xenoRefGene.name (via xenoEst.qName)
      hg19.xenoRefSeqAli.qName (via xenoEst.qName)
      hgFixed.gbCdnaInfo.acc (via xenoEst.qName)
      hgFixed.gbMiscDiff.acc (via xenoEst.qName)
      hgFixed.gbSeq.acc (via xenoEst.qName)
      hgFixed.gbWarn.acc (via xenoEst.qName)
      hgFixed.imageClone.acc (via xenoEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854110000000-+AA542579418367418chr12492506211300313054151,0,13003,
5852032700002758+-AA536770517197427chr12492506211496615954397,61,72,197,294,355,249234667,249234765,249235583,
585331440014336778+-AA38872850789507chr12492506211762524778443,68,147,117,89,175,243,390,249225843,249232286,249232560,249232879,
585332440014336778-+AA38872850788507chr124925062117625247794117,147,69,43,0,117,264,376,17625,17914,18267,24736,
58710990022124396+-AA222500507146476chr1249250621371252371766521,20,38,12,27,146,310,330,368,449,248878855,248879212,248879233,248879272,248879342,
58710990022124396+-AA789948448111441chr1249250621371252371766521,20,38,12,27,111,275,295,333,414,248878855,248879212,248879233,248879272,248879342,
58710480022124396+-AA41414241490414chr1249250621371258371766521,20,38,12,21,90,254,274,312,393,248878855,248879212,248879233,248879272,248879342,
5877270011432337+-AA241090499216438chr1249250621371350371766321,20,38,216,380,400,248878855,248879212,248879233,
5895820000000++AA64769414564142chr1249250621565106565184178,64,565106,
5896021000000++AA07306012945126chr1249250621565106565187181,45,565106,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.