Schema for mrnaOrientInfo
  Database: hg16    Primary Table: mrnaOrientInfo    Row Count: 3,857,204   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 1736int(10) unsigned Start position in chromosome
chromEnd 4223int(10) unsigned End position in chromosome
name AM992877varchar(255) Accession of EST
intronOrientation 2smallint(6) Orientation of introns with respect to EST
sizePolyA 1smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hg16.all_mrna.qName (via mrnaOrientInfo.name)
      hg16.altGraphX.mrnaRefs (via mrnaOrientInfo.name)
      hg16.dupSpMrna.dupMrnaID (via mrnaOrientInfo.name)
      hg16.dupSpMrna.mrnaID (via mrnaOrientInfo.name)
      hg16.kgXref.refseq (via mrnaOrientInfo.name)
      hg16.knownToRefSeq.value (via mrnaOrientInfo.name)
      hg16.mgcFullMrna.qName (via mrnaOrientInfo.name)
      hg16.mgcGenes.name (via mrnaOrientInfo.name)
      hg16.mrnaRefseq.mrna (via mrnaOrientInfo.name)
      hg16.mrnaRefseq.refseq (via mrnaOrientInfo.name)
      hg16.refFlat.name (via mrnaOrientInfo.name)
      hg16.refGene.name (via mrnaOrientInfo.name)
      hg16.refSeqAli.qName (via mrnaOrientInfo.name)
      hg16.spMrna.mrnaID (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr117364223AM99287721000
585chr117364223AM99288121000
585chr117364225AM99287820000
585chr117364225AM99287920000
585chr117364272AM992871200250
585chr117364272AM992872200250
585chr117364272AM992875200250
585chr117364272AM992880200250
585chr117364272BC0323532340590
585chr124754225AM99287310000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.