Schema for mrnaOrientInfo
  Database: galGal4    Primary Table: mrnaOrientInfo    Row Count: 39,857   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 15046int(10) unsigned range Start position in chromosome
chromEnd 16230int(10) unsigned range End position in chromosome
name CR405839varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal4.all_mrna.qName (via mrnaOrientInfo.name)
      galGal4.refFlat.name (via mrnaOrientInfo.name)
      galGal4.refGene.name (via mrnaOrientInfo.name)
      galGal4.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11504616230CR40583920000
585chr12864029425BX95059600000
585chr14111045973CR35248040100
585chr17700989017AJ7192841316000
585chr1103903106243BX929788-40000
585chr1103904106254CR73287240000
585chr1106357110256BX93096770000
585chr1106358110256BX93316770000
585chr1108200110256BX95054530000
588chr1427004428666X5599800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.