Schema for estOrientInfo
  Database: droSim1    Primary Table: estOrientInfo    Row Count: 120,235   Data last updated: 2016-12-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 426455int(10) unsigned range Start position in chromosome
chromEnd 427026int(10) unsigned range End position in chromosome
name BG642292varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droSim1.all_est.qName (via estOrientInfo.name)
      droSim1.est.qName (via estOrientInfo.name)
      droSim1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
588chr2L426455427026BG64229210100
589chr2L554062554522BG64228501000
622chr2L48499074850308BG642307201110
623chr2L50131605013679BG64219020000
623chr2L50132965013681BG64233220000
624chr2L52368305237019BG64218800000
628chr2L56765885677002BG64224111000
628chr2L56765955677035BG64227610000
628chr2L56766035677060BG64235610000
628chr2L56831395683601BG642296100110

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.