Schema for mrnaOrientInfo
  Database: danRer7    Primary Table: mrnaOrientInfo    Row Count: 51,805   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Zv9_NA110varchar(255) values Reference sequence chromosome or scaffold
chromStart 3369int(10) unsigned range Start position in chromosome
chromEnd 25536int(10) unsigned range End position in chromosome
name BC157389varchar(255) values Accession of EST
intronOrientation 14smallint(6) range Orientation of introns with respect to EST
sizePolyA 76smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer7.all_mrna.qName (via mrnaOrientInfo.name)
      danRer7.mgcFullMrna.qName (via mrnaOrientInfo.name)
      danRer7.mgcGenes.name (via mrnaOrientInfo.name)
      danRer7.refFlat.name (via mrnaOrientInfo.name)
      danRer7.refGene.name (via mrnaOrientInfo.name)
      danRer7.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Zv9_NA110336925536BC1573891476000
585Zv9_NA11911613883BC0488782420650
585Zv9_NA122012938BC16581420000
585Zv9_NA122012989AF3398382150350
585Zv9_NA122012989AY6939942150350
585Zv9_NA122013196BC0454512580820
585Zv9_NA122013201BC0656612330590
585Zv9_NA1233915044920BC1428292170390
585Zv9_NA12935098395BC0460146200370
585Zv9_NA141410415125BC06756360000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.