Schema for mrnaOrientInfo
  Database: danRer5    Primary Table: mrnaOrientInfo    Row Count: 55,538   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Zv7_NA1varchar(255) values Reference sequence chromosome or scaffold
chromStart 81565int(10) unsigned range Start position in chromosome
chromEnd 88180int(10) unsigned range End position in chromosome
name BC159105varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 29smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 50smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer5.all_mrna.qName (via mrnaOrientInfo.name)
      danRer5.mgcFullMrna.qName (via mrnaOrientInfo.name)
      danRer5.mgcGenes.name (via mrnaOrientInfo.name)
      danRer5.refFlat.name (via mrnaOrientInfo.name)
      danRer5.refGene.name (via mrnaOrientInfo.name)
      danRer5.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Zv7_NA18156588180BC1591052290500
585Zv7_NA19286195822BC096928230000
585Zv7_NA1110395121452BC076296517000
585Zv7_NA10001666633963BC055124120000
585Zv7_NA100191575124901BC153528926000
585Zv7_NA100194192124901BC124534834000
585Zv7_NA100194526124901BC16480380000
585Zv7_NA10024907649227BC16316800000
585Zv7_NA10024907649227BC16317900000
585Zv7_NA10047981080983FN42871821000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.