Schema for mrnaOrientInfo
  Database: thaSir1    Primary Table: mrnaOrientInfo    Row Count: 63   Data last updated: 2018-06-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom NW_013657781v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 369074int(10) unsigned range Start position in chromosome
chromEnd 391968int(10) unsigned range End position in chromosome
name AY851743varchar(255) values Accession of EST
intronOrientation 10smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      thaSir1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587NW_013657781v1369074391968AY851743100000
587NW_013657781v1369074391968AY851744100000
587NW_013657781v1369074391968AY851745100000
587NW_013657781v1369074391968AY851746100000
73NW_013658040v1255627427878KJ908903110000
587NW_013658040v1276978279697KM06611920000
587NW_013658040v1383160383719KJ90887512000
590NW_013658040v1682227715904KJ90893690000
588NW_013658133v1486522489453KY4269193390580
586NW_013658359v1257395257647KY4346660260480

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.