Schema for mrnaOrientInfo
  Database: hg38    Primary Table: mrnaOrientInfo    Row Count: 10,578,796   Data last updated: 2020-08-17
Format description: Extra information on ESTs - calculated by polyInfo program
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 11873int(10) unsigned Start position in chromosome
chromEnd 14361int(10) unsigned End position in chromosome
name AM992877varchar(255) Accession of EST
intronOrientation 2smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hg38.all_mrna.qName (via mrnaOrientInfo.name)
      hg38.ccdsInfo.mrnaAcc (via mrnaOrientInfo.name)
      hg38.kgXref.refseq (via mrnaOrientInfo.name)
      hg38.knownToRefSeq.value (via mrnaOrientInfo.name)
      hg38.mgcFullMrna.qName (via mrnaOrientInfo.name)
      hg38.mgcGenes.name (via mrnaOrientInfo.name)
      hg38.orfeomeGenes.name (via mrnaOrientInfo.name)
      hg38.orfeomeMrna.qName (via mrnaOrientInfo.name)
      hg38.refFlat.name (via mrnaOrientInfo.name)
      hg38.refGene.name (via mrnaOrientInfo.name)
      hg38.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11187314361AM99287720000
585chr11187314361AM99288120000
585chr11187314362AM99287820000
585chr11187314362AM99287920000
585chr11187314409AM992871200250
585chr11187314409AM992872200250
585chr11187314409AM992875200250
585chr11187314409AM992880200250
585chr11187314409BC0323532340590
585chr11187314409LP896001300250

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.