Schema for kgXref
  Database: hg38    Primary Table: kgXref    Row Count: 272,178   Data last updated: 2022-07-13
Format description: Link together a Known Gene ID and a gene alias
fieldexampleSQL type info description
kgID ENST00000000233.10varchar(255) values Known Gene ID
mRNA NM_001662varchar(255) values mRNA ID
spID P84085varchar(255) values UniProt protein Accession number
spDisplayID ARF5_HUMANvarchar(255) values UniProt display ID
geneSymbol ARF5varchar(255) values Gene Symbol
refseq NM_001662varchar(255) values RefSeq ID
protAcc NM_001662varchar(255) values NCBI protein Accession number
description Homo sapiens ADP ribosylati...longblob   Description
rfamAcc  varchar(255) values Rfam accession number
tRnaName  varchar(255) values Name from the tRNA track

Connected Tables and Joining Fields
        hg38.cgapAlias.alias (via kgXref.geneSymbol)
      hg38.geneReviews.name (via kgXref.geneSymbol)
      hg38.geneReviewsDetail.geneSymbol (via kgXref.geneSymbol)
      hg38.kgAlias.alias (via kgXref.geneSymbol)
      hg38.kgSpAlias.alias (via kgXref.geneSymbol)
      hg38.omimGeneMap.geneSymbol (via kgXref.geneSymbol)
      hg38.omimGeneMap2.geneSymbol (via kgXref.geneSymbol)
      hg38.refFlat.geneName (via kgXref.geneSymbol)
      hgFixed.ctdSorted.GeneSymbol (via kgXref.geneSymbol)
      hgFixed.ggGeneClass.gene (via kgXref.geneSymbol)
      hgFixed.ggGeneName.gene (via kgXref.geneSymbol)
      hgFixed.ggLink.gene1 (via kgXref.geneSymbol)
      hgFixed.ggLink.gene2 (via kgXref.geneSymbol)
      hgFixed.refLink.name (via kgXref.geneSymbol)
      visiGene.gene.name (via kgXref.geneSymbol)
      hg38.bioCycPathway.kgID (via kgXref.kgID)
      hg38.ccdsKgMap.geneId (via kgXref.kgID)
      hg38.ceBlastTab.query (via kgXref.kgID)
      hg38.dmBlastTab.query (via kgXref.kgID)
      hg38.drBlastTab.query (via kgXref.kgID)
      hg38.foldUtr3.name (via kgXref.kgID)
      hg38.foldUtr5.name (via kgXref.kgID)
      hg38.gnfAtlas2Distance.query (via kgXref.kgID)
      hg38.gnfAtlas2Distance.target (via kgXref.kgID)
      hg38.gnfU95Distance.query (via kgXref.kgID)
      hg38.gnfU95Distance.target (via kgXref.kgID)
      hg38.humanHprdP2P.query (via kgXref.kgID)
      hg38.humanHprdP2P.target (via kgXref.kgID)
      hg38.humanVidalP2P.query (via kgXref.kgID)
      hg38.humanVidalP2P.target (via kgXref.kgID)
      hg38.humanWankerP2P.query (via kgXref.kgID)
      hg38.humanWankerP2P.target (via kgXref.kgID)
      hg38.keggPathway.kgID (via kgXref.kgID)
      hg38.kgAlias.kgID (via kgXref.kgID)
      hg38.kgColor.kgID (via kgXref.kgID)
      hg38.kgProtAlias.kgID (via kgXref.kgID)
      hg38.kgSpAlias.kgID (via kgXref.kgID)
      hg38.kgTargetAli.qName (via kgXref.kgID)
      hg38.knownAttrs.kgID (via kgXref.kgID)
      hg38.knownBlastTab.query (via kgXref.kgID)
      hg38.knownBlastTab.target (via kgXref.kgID)
      hg38.knownCanonical.transcript (via kgXref.kgID)
      hg38.knownCds.name (via kgXref.kgID)
      hg38.knownGene.name (via kgXref.kgID)
      hg38.knownGeneMrna.name (via kgXref.kgID)
      hg38.knownGenePep.name (via kgXref.kgID)
      hg38.knownIsoforms.transcript (via kgXref.kgID)
      hg38.knownToEnsembl.name (via kgXref.kgID)
      hg38.knownToGnfAtlas2.name (via kgXref.kgID)
      hg38.knownToHprd.name (via kgXref.kgID)
      hg38.knownToKeggEntrez.name (via kgXref.kgID)
      hg38.knownToLocusLink.name (via kgXref.kgID)
      hg38.knownToLynx.name (via kgXref.kgID)
      hg38.knownToMrna.name (via kgXref.kgID)
      hg38.knownToMrnaSingle.name (via kgXref.kgID)
      hg38.knownToMupit.name (via kgXref.kgID)
      hg38.knownToNextProt.name (via kgXref.kgID)
      hg38.knownToPfam.name (via kgXref.kgID)
      hg38.knownToRefSeq.name (via kgXref.kgID)
      hg38.knownToSuper.gene (via kgXref.kgID)
      hg38.knownToTag.name (via kgXref.kgID)
      hg38.knownToU133.name (via kgXref.kgID)
      hg38.knownToU95.name (via kgXref.kgID)
      hg38.knownToVisiGene.name (via kgXref.kgID)
      hg38.knownToWikipedia.name (via kgXref.kgID)
      hg38.mmBlastTab.query (via kgXref.kgID)
      hg38.rnBlastTab.query (via kgXref.kgID)
      hg38.scBlastTab.query (via kgXref.kgID)
      hg38.ucscScop.ucscId (via kgXref.kgID)
      hg38.kgProtAlias.alias (via kgXref.protAcc)
      hg38.kgSpAlias.alias (via kgXref.protAcc)
      hgFixed.refLink.protAcc (via kgXref.protAcc)
      hg38.ccdsInfo.mrnaAcc (via kgXref.refseq)
      hg38.knownToRefSeq.value (via kgXref.refseq)
      hg38.mrnaOrientInfo.name (via kgXref.refseq)
      hg38.refFlat.name (via kgXref.refseq)
      hg38.refGene.name (via kgXref.refseq)
      hg38.refSeqAli.qName (via kgXref.refseq)
      hgFixed.gbCdnaInfo.acc (via kgXref.refseq)
      hgFixed.gbSeq.acc (via kgXref.refseq)
      hgFixed.imageClone.acc (via kgXref.refseq)
      hgFixed.refLink.mrnaAcc (via kgXref.refseq)
      hgFixed.refSeqStatus.mrnaAcc (via kgXref.refseq)
      hgFixed.refSeqSummary.mrnaAcc (via kgXref.refseq)
      go.goaPart.dbObjectSymbol (via kgXref.spDisplayID)
      hg38.spMrna.spID (via kgXref.spDisplayID)
      proteome.spOldNew.newDisplayId (via kgXref.spDisplayID)
      proteome.spOldNew.oldDisplayId (via kgXref.spDisplayID)
      uniProt.displayId.val (via kgXref.spDisplayID)
      go.goaPart.dbObjectId (via kgXref.spID)
      hg38.kgSpAlias.spID (via kgXref.spID)
      proteome.hgncXref.uniProt (via kgXref.spID)
      proteome.spOldNew.acc (via kgXref.spID)
      proteome.spReactomeEvent.spID (via kgXref.spID)
      proteome.spReactomeId.spID (via kgXref.spID)
      uniProt.accToKeyword.acc (via kgXref.spID)
      uniProt.accToTaxon.acc (via kgXref.spID)
      uniProt.citation.acc (via kgXref.spID)
      uniProt.comment.acc (via kgXref.spID)
      uniProt.description.acc (via kgXref.spID)
      uniProt.displayId.acc (via kgXref.spID)
      uniProt.extDbRef.acc (via kgXref.spID)
      uniProt.feature.acc (via kgXref.spID)
      uniProt.gene.acc (via kgXref.spID)
      uniProt.geneLogic.acc (via kgXref.spID)
      uniProt.info.acc (via kgXref.spID)
      uniProt.otherAcc.acc (via kgXref.spID)
      uniProt.protein.acc (via kgXref.spID)
      visiGene.gene.uniProt (via kgXref.spID)

Sample Rows
 
kgIDmRNAspIDspDisplayIDgeneSymbolrefseqprotAccdescriptionrfamAcctRnaName
ENST00000000233.10NM_001662P84085ARF5_HUMANARF5NM_001662NM_001662Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA. (from RefSeq NM_001662)
ENST00000000412.8NM_002355P20645MPRD_HUMANM6PRNM_002355NM_002355Homo sapiens mannose-6-phosphate receptor, cation dependent (M6PR), transcript variant 1, mRNA. (from RefSeq NM_002355)
ENST00000000442.11NM_004451Q569H8Q569H8_HUMANESRRANM_004451NM_004451Homo sapiens estrogen related receptor alpha (ESRRA), transcript variant 1, mRNA. (from RefSeq NM_004451)
ENST00000001008.6NM_002014Q02790FKBP4_HUMANFKBP4NM_002014NM_002014Homo sapiens FKBP prolyl isomerase 4 (FKBP4), mRNA. (from RefSeq NM_002014)
ENST00000001146.7NM_019885Q9NR63CP26B_HUMANCYP26B1NM_019885NM_019885Homo sapiens cytochrome P450 family 26 subfamily B member 1 (CYP26B1), transcript variant 1, mRNA. (from RefSeq NM_019885)
ENST00000002125.9NR_146409Q7L592MIDA_HUMANNDUFAF7NR_146409NR_146409Homo sapiens NADH:ubiquinone oxidoreductase complex assembly factor 7 (NDUFAF7), transcript variant 14, non-coding RNA. (from Re ...
ENST00000002165.11NM_032020Q9BTY2FUCO2_HUMANFUCA2NM_032020NM_032020Homo sapiens alpha-L-fucosidase 2 (FUCA2), mRNA. (from RefSeq NM_032020)
ENST00000002501.11NM_001042610Q9H9R9DBND1_HUMANDBNDD1NM_001042610NM_001042610Homo sapiens dysbindin domain containing 1 (DBNDD1), transcript variant 1, mRNA. (from RefSeq NM_001042610)
ENST00000002596.6NM_005114O14792HS3S1_HUMANHS3ST1NM_005114NM_005114Homo sapiens heparan sulfate-glucosamine 3-sulfotransferase 1 (HS3ST1), mRNA. (from RefSeq NM_005114)
ENST00000002829.8NM_004186Q13275SEM3F_HUMANSEMA3FNM_004186NM_004186Homo sapiens semaphorin 3F (SEMA3F), transcript variant 1, mRNA. (from RefSeq NM_004186)

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.