Schema for estOrientInfo
  Database: hg18    Primary Table: estOrientInfo    Row Count: 8,380,842   Data last updated: 2019-09-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 4266int(10) unsigned Start position in chromosome
chromEnd 4903int(10) unsigned End position in chromosome
name AA853941varchar(255) Accession of EST
intronOrientation -1smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 1smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 21smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hg18.all_est.qName (via estOrientInfo.name)
      hg18.est.qName (via estOrientInfo.name)
      hg18.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr142664903AA853941-101021
585chr142684455AA411542000180
585chr142684677AA485730000018
585chr142686858AA733167000018
585chr143724641AA32153200000
585chr145175747AA55258120000
585chr156626918AA37887700000
585chr163046626AA84358000400
585chr163047919AA934583-10600
585chr164817161AA27841210000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.