Schema for mrnaOrientInfo
  Database: fr1    Primary Table: mrnaOrientInfo    Row Count: 1,415   Data last updated: 2020-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 423882int(10) unsigned range Start position in chromosome
chromEnd 429809int(10) unsigned range End position in chromosome
name AY845027varchar(255) values Accession of EST
intronOrientation 10smallint(6) range Orientation of introns with respect to EST
sizePolyA 9smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        fr1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
588chrUn423882429809AY845027109000
591chrUn831088833111AJ310911500230
594chrUn12644341267328DQ28812740000
596chrUn14681141472502DQ34203612180380
75chrUn30131073015187DQ65933130000
76chrUn32755333277137AB23641310000
611chrUn34872883488059AB0898202290540
614chrUn38527453854353AY116072000110
76chrUn40624364064302AB465008760270
616chrUn40700884070877AB23512730000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.