Schema for xenoRefFlat
  Database: equCab1    Primary Table: xenoRefFlat    Row Count: 320,808   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Dlk1varchar(255) values Name of gene as it appears in genome browser.
name NM_001190703varchar(255) values Name of gene
chrom chr24varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 42100515int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 42108213int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 42100582int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 42108179int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 42100515,42102378,42105379,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 42100642,42102513,42105521,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        equCab1.xenoMrna.qName (via xenoRefFlat.name)
      equCab1.xenoRefGene.name (via xenoRefFlat.name)
      equCab1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Dlk1NM_001190703chr24+42100515421082134210058242108179642100515,42102378,42105379,42107430,42107536,42107936,42100642,42102513,42105521,42107533,42107650,42108213,
MTRNR2L8NM_001190702chr8-77493298774938527749355877493633377493298,77493436,77493524,77493374,77493457,77493852,
MTRNR2L8NM_001190702chrM+118324222422242251183,1609,1863,2264,2346,1507,1663,2013,2306,2422,
mthfsNM_001200691chr1+1119015151119017341119015151119017341111901515,111901734,
HMGCRNM_001130996chr14-885973888861477188599304886147422288597388,88597720,88597957,88598126,88598521,88599304,88599883,88600125,88600580,88602509,88603293,88604127,88605389,88605682,88 ...88597483,88597931,88598053,88598265,88598767,88599468,88600042,88600266,88600751,88602615,88603451,88604322,88605568,88605933,88 ...
CG34384NM_001260041chr6+203824572041770620382457204177061120382457,20383427,20383924,20385024,20387844,20391173,20391265,20400804,20403096,20404230,20417589,20382554,20383534,20384053,20385153,20387951,20391264,20391316,20400909,20403204,20404332,20417706,
porinNM_001259032chr1+62019899620206426201989962020642262019899,62020471,62020052,62020642,
lapNM_001260029chr10-32087043321491883208704332149188732087043,32095021,32096764,32098829,32099906,32100633,32149134,32087150,32095124,32096842,32098934,32099969,32100762,32149188,
lapNM_001260029chr7+47428753474837184742875347483718547428753,47460872,47468076,47481991,47483603,47428882,47461004,47468181,47482089,47483718,
lapNM_001260030chr10-32087043321491883208704332149188732087043,32095021,32096764,32098829,32099906,32100633,32149134,32087150,32095124,32096842,32098934,32099969,32100762,32149188,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.