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Database: cavPor3 Primary Table: all_est Row Count: 26,107   Data last updated: 2016-06-18
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 150 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | AU083190 | varchar(255) | values | Query sequence name |
qSize | 150 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 150 | int(10) unsigned | range | Alignment end position in query |
tName | chrM | varchar(255) | values | Target sequence name |
tSize | 16801 | int(10) unsigned | range | Target sequence size |
tStart | 4568 | int(10) unsigned | range | Alignment start position in target |
tEnd | 4718 | int(10) unsigned | range | Alignment end position in target |
blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 150, | longblob | | Size of each block |
qStarts | 0, | longblob | | Start of each block in query. |
tStarts | 4568, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 150 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AU083190 | 150 | 0 | 150 | chrM | 16801 | 4568 | 4718 | 1 | 150, | 0, | 4568, |
585 | 241 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AU083201 | 241 | 0 | 241 | chrM | 16801 | 6610 | 6851 | 1 | 241, | 0, | 6610, |
585 | 323 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AU083259 | 323 | 0 | 323 | chrM | 16801 | 9535 | 9858 | 1 | 323, | 0, | 9535, |
585 | 286 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AU083342 | 286 | 0 | 286 | chrM | 16801 | 14175 | 14461 | 1 | 286, | 0, | 14175, |
797 | 434 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AU083173 | 434 | 0 | 434 | scaffold_0 | 88675666 | 27875657 | 27876091 | 1 | 434, | 0, | 27875657, |
831 | 319 | 2 | 0 | 0 | 0 | 0 | 3 | 5724 | - | AU083242 | 335 | 14 | 335 | scaffold_0 | 88675666 | 32348544 | 32354589 | 4 | 57,46,109,109, | 0,57,103,212, | 32348544,32350363,32352437,32354480, |
1073 | 598 | 0 | 40 | 0 | 1 | 1 | 1 | 1 | + | AU083313 | 639 | 0 | 639 | scaffold_0 | 88675666 | 64001750 | 64002389 | 3 | 107,347,184, | 0,107,455, | 64001750,64001858,64002205, |
1136 | 436 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | + | AU083328 | 437 | 0 | 437 | scaffold_0 | 88675666 | 72282292 | 72282728 | 2 | 119,317, | 0,120, | 72282292,72282411, |
1142 | 327 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | AU083230 | 328 | 0 | 328 | scaffold_0 | 88675666 | 73024055 | 73024383 | 1 | 328, | 0, | 73024055, |
1261 | 337 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AU083314 | 337 | 0 | 337 | scaffold_0 | 88675666 | 88638098 | 88638435 | 1 | 337, | 0, | 88638098, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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