Schema for all_mrna
  Database: allMis1    Primary Table: all_mrna    Row Count: 157   Data last updated: 2020-05-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 80int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName DQ386682varchar(255) values Query sequence name
qSize 1414int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 80int(10) unsigned range Alignment end position in query
tName AKHW01113626varchar(255) values Target sequence name
tSize 1485int(10) unsigned range Target sequence size
tStart 162int(10) unsigned range Alignment start position in target
tEnd 242int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 80,longblob   Size of each block
qStarts 1334,longblob   Start of each block in query.
tStarts 162,longblob   Start of each block in target.

Connected Tables and Joining Fields
        allMis1.all_est.qName (via all_mrna.qName)
      allMis1.mrnaOrientInfo.name (via all_mrna.qName)
      allMis1.refGene.name (via all_mrna.qName)
      allMis1.refSeqAli.qName (via all_mrna.qName)
      allMis1.xenoMrna.qName (via all_mrna.qName)
      allMis1.xenoRefGene.name (via all_mrna.qName)
      allMis1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585800000000-DQ3866821414080AKHW011136261485162242180,1334,162,
5852720010031749-JF2646482730273JH7310723323748248284504415,78,104,76,0,15,93,197,82482,83090,83877,84428,
58541710011623502-DQ0101574200419JH7312064154623217256092824,5,27,99,75,69,78,41,1,25,30,58,157,232,301,379,32172,32197,32203,32230,45495,45679,49995,56051,
585830000000-M593831763750833JH7371994760372967629759183,930,29676,
5882500000001318799-AB306287266002500JH73126678568639847241977114198,762,541,101,52,117,103,111,85,67,71,70,58,164,160,358,1120,1661,1762,1814,1931,2034,2145,2230,2297,2368,2438,2496,398472,398671,399434,402492,402806,403534,406073,409311,411117,412994,413772,413971,416028,419607,
58560110100621345-JF2647056063606JH731360101167098215120163739,40,76,106,96,124,122,0,39,79,155,261,357,481,98215,100533,102888,114059,116188,117679,120041,
5892900050026415+JF2646692950295JH7313601011670551990558700396,179,20,0,96,275,551990,554865,558680,
5862841300000+EU8484732880288JH7313891983831721591724471288,0,172159,
585122123501229163+AB280536126111261JH731403697842645016871475,155,930,98,1,76,231,1163,6450,12957,15843,16773,
58836900120034359+JF2646943820381JH731525512746433494438234490,117,102,72,0,90,207,309,433494,433920,436848,438162,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.