Schema for mrnaOrientInfo
  Database: strPur1    Primary Table: mrnaOrientInfo    Row Count: 48,815   Data last updated: 2020-02-07
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Scaffold1varchar(255) values Reference sequence chromosome or scaffold
chromStart 185int(10) unsigned range Start position in chromosome
chromEnd 5073int(10) unsigned range End position in chromosome
name JT095622varchar(255) values Accession of EST
intronOrientation 7smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      strPur1.all_mrna.qName (via mrnaOrientInfo.name)
      strPur1.refFlat.name (via mrnaOrientInfo.name)
      strPur1.refGene.name (via mrnaOrientInfo.name)
      strPur1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Scaffold11855073JT09562270000
585Scaffold11522219480JT12119711000
585Scaffold12276724993JT12250620000
585Scaffold12276726101JT10244030000
585Scaffold12638931910JT123297400220
585Scaffold13508936297JT10177100000
586Scaffold1137780148796JT11971750000
586Scaffold1151230236574JT11732450000
586Scaffold1151230241002JT11068050000
73Scaffold1328625409209JT115239400020

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.