Schema for mrnaOrientInfo
  Database: ponAbe3    Primary Table: mrnaOrientInfo    Row Count: 8,821   Data last updated: 2018-10-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 67049int(10) unsigned range Start position in chromosome
chromEnd 74725int(10) unsigned range End position in chromosome
name CR858616varchar(255) values Accession of EST
intronOrientation 6smallint(6) range Orientation of introns with respect to EST
sizePolyA 15smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 37smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      ponAbe3.all_mrna.qName (via mrnaOrientInfo.name)
      ponAbe3.refFlat.name (via mrnaOrientInfo.name)
      ponAbe3.refGene.name (via mrnaOrientInfo.name)
      ponAbe3.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr16704974725CR8586166150370
585chr197657112869CR859251613501610
602chr122859692334983CR860933111000
76chr140140224174712CR8584676160290
77chr144400964500977CR8614024170400
642chr175370307594731CR85982413160350
643chr176073377629481CR8587319130360
10chr192372929757951CR859367517000
672chr11148862711523205CR8597388150000
84chr11242353012487941CR8598821913000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.