Schema for mrnaOrientInfo
  Database: melGal1    Primary Table: mrnaOrientInfo    Row Count: 345   Data last updated: 2017-01-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 173784int(10) unsigned range Start position in chromosome
chromEnd 175339int(10) unsigned range End position in chromosome
name AM167974varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 25smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 44smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      melGal1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr1173784175339AM1679743250440
647chr182200938241402KR52857770000
743chr12071123520725264KR52857578000
865chr13678092736782164JQ28047120000
876chr13825144638264349DQ07497640000
904chr14182956241829927GU22306801000
917chr14363984943641692KC59410110000
981chr15197229551975273GQ28132630000
1001chr15460297554605413EF05079430000
1004chr15496097054961318AF540412012000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.