Schema for rnBlastTab
  Database: hg38    Primary Table: rnBlastTab    Row Count: 99,699   Data last updated: 2022-05-15
Format description: Blast alignments of Rat genes
fieldexampleSQL type info description
query ENST00000426406.4varchar(255) values Name of sequence in this assembly (query)
target ENSRNOT00000045645.1varchar(255) values Name of sequence in other assembly (target)
identity 83.01float range Percent identity
aliLength 312int(10) unsigned range Length of alignment
mismatch 53int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 312int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 312int(10) unsigned range End in target (non-inclusive)
eValue 3e-148double range Expectation value
bitScore 521double range Bit score

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via rnBlastTab.query)
      hg38.ccdsKgMap.geneId (via rnBlastTab.query)
      hg38.ceBlastTab.query (via rnBlastTab.query)
      hg38.dmBlastTab.query (via rnBlastTab.query)
      hg38.drBlastTab.query (via rnBlastTab.query)
      hg38.foldUtr3.name (via rnBlastTab.query)
      hg38.foldUtr5.name (via rnBlastTab.query)
      hg38.gnfAtlas2Distance.query (via rnBlastTab.query)
      hg38.gnfAtlas2Distance.target (via rnBlastTab.query)
      hg38.gnfU95Distance.query (via rnBlastTab.query)
      hg38.gnfU95Distance.target (via rnBlastTab.query)
      hg38.humanHprdP2P.query (via rnBlastTab.query)
      hg38.humanHprdP2P.target (via rnBlastTab.query)
      hg38.humanVidalP2P.query (via rnBlastTab.query)
      hg38.humanVidalP2P.target (via rnBlastTab.query)
      hg38.humanWankerP2P.query (via rnBlastTab.query)
      hg38.humanWankerP2P.target (via rnBlastTab.query)
      hg38.keggPathway.kgID (via rnBlastTab.query)
      hg38.kgAlias.kgID (via rnBlastTab.query)
      hg38.kgColor.kgID (via rnBlastTab.query)
      hg38.kgProtAlias.kgID (via rnBlastTab.query)
      hg38.kgSpAlias.kgID (via rnBlastTab.query)
      hg38.kgTargetAli.qName (via rnBlastTab.query)
      hg38.kgXref.kgID (via rnBlastTab.query)
      hg38.knownAttrs.kgID (via rnBlastTab.query)
      hg38.knownBlastTab.query (via rnBlastTab.query)
      hg38.knownBlastTab.target (via rnBlastTab.query)
      hg38.knownCanonical.transcript (via rnBlastTab.query)
      hg38.knownCds.name (via rnBlastTab.query)
      hg38.knownGene.name (via rnBlastTab.query)
      hg38.knownGeneMrna.name (via rnBlastTab.query)
      hg38.knownGenePep.name (via rnBlastTab.query)
      hg38.knownIsoforms.transcript (via rnBlastTab.query)
      hg38.knownToEnsembl.name (via rnBlastTab.query)
      hg38.knownToGnfAtlas2.name (via rnBlastTab.query)
      hg38.knownToHprd.name (via rnBlastTab.query)
      hg38.knownToKeggEntrez.name (via rnBlastTab.query)
      hg38.knownToLocusLink.name (via rnBlastTab.query)
      hg38.knownToLynx.name (via rnBlastTab.query)
      hg38.knownToMrna.name (via rnBlastTab.query)
      hg38.knownToMrnaSingle.name (via rnBlastTab.query)
      hg38.knownToMupit.name (via rnBlastTab.query)
      hg38.knownToNextProt.name (via rnBlastTab.query)
      hg38.knownToPfam.name (via rnBlastTab.query)
      hg38.knownToRefSeq.name (via rnBlastTab.query)
      hg38.knownToSuper.gene (via rnBlastTab.query)
      hg38.knownToTag.name (via rnBlastTab.query)
      hg38.knownToU133.name (via rnBlastTab.query)
      hg38.knownToU95.name (via rnBlastTab.query)
      hg38.knownToVisiGene.name (via rnBlastTab.query)
      hg38.knownToWikipedia.name (via rnBlastTab.query)
      hg38.mmBlastTab.query (via rnBlastTab.query)
      hg38.scBlastTab.query (via rnBlastTab.query)
      hg38.ucscScop.ucscId (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENST00000426406.4ENSRNOT00000045645.183.01312530031203123e-148521
ENST00000332831.5ENSRNOT00000045645.183.01312530031203123e-148521
ENST00000616016.5ENSRNOT00000027564.671.665611341130084305542e-167586
ENST00000618323.5ENSRNOT00000027564.671.845611341130084405543e-168589
ENST00000342066.8ENSRNOT00000027564.669.675771341212168005543e-162569
ENST00000616125.5ENSRNOT00000027564.671.943608882205721995543e-98356
ENST00000617307.5ENSRNOT00000027564.666.725771311312166005541e-147520
ENST00000618181.5ENSRNOT00000027564.671.943608882035551995543e-98356
ENST00000618779.5ENSRNOT00000027564.673.5745410781726181055542e-137486
ENST00000622503.5ENSRNOT00000027564.669.845771341212168105547e-163571

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.