Schema for knownIsoforms
  Database: hg38    Primary Table: knownIsoforms    Row Count: 272,178   Data last updated: 2022-05-15
Format description: Links together various transcripts of a gene into a cluster
fieldexampleSQL type info description
clusterId 1int(11) range Unique id for transcript cluster (aka gene)
transcript ENST00000373020.9varchar(255) values Corresponds to name in knownGene table, transcript in knownCanonical

Connected Tables and Joining Fields
        hg38.knownCanonical.clusterId (via knownIsoforms.clusterId)
      hg38.bioCycPathway.kgID (via knownIsoforms.transcript)
      hg38.ccdsKgMap.geneId (via knownIsoforms.transcript)
      hg38.ceBlastTab.query (via knownIsoforms.transcript)
      hg38.dmBlastTab.query (via knownIsoforms.transcript)
      hg38.drBlastTab.query (via knownIsoforms.transcript)
      hg38.foldUtr3.name (via knownIsoforms.transcript)
      hg38.foldUtr5.name (via knownIsoforms.transcript)
      hg38.gnfAtlas2Distance.query (via knownIsoforms.transcript)
      hg38.gnfAtlas2Distance.target (via knownIsoforms.transcript)
      hg38.gnfU95Distance.query (via knownIsoforms.transcript)
      hg38.gnfU95Distance.target (via knownIsoforms.transcript)
      hg38.humanHprdP2P.query (via knownIsoforms.transcript)
      hg38.humanHprdP2P.target (via knownIsoforms.transcript)
      hg38.humanVidalP2P.query (via knownIsoforms.transcript)
      hg38.humanVidalP2P.target (via knownIsoforms.transcript)
      hg38.humanWankerP2P.query (via knownIsoforms.transcript)
      hg38.humanWankerP2P.target (via knownIsoforms.transcript)
      hg38.keggPathway.kgID (via knownIsoforms.transcript)
      hg38.kgAlias.kgID (via knownIsoforms.transcript)
      hg38.kgColor.kgID (via knownIsoforms.transcript)
      hg38.kgProtAlias.kgID (via knownIsoforms.transcript)
      hg38.kgSpAlias.kgID (via knownIsoforms.transcript)
      hg38.kgTargetAli.qName (via knownIsoforms.transcript)
      hg38.kgXref.kgID (via knownIsoforms.transcript)
      hg38.knownAttrs.kgID (via knownIsoforms.transcript)
      hg38.knownBlastTab.query (via knownIsoforms.transcript)
      hg38.knownBlastTab.target (via knownIsoforms.transcript)
      hg38.knownCanonical.transcript (via knownIsoforms.transcript)
      hg38.knownCds.name (via knownIsoforms.transcript)
      hg38.knownGene.name (via knownIsoforms.transcript)
      hg38.knownGeneMrna.name (via knownIsoforms.transcript)
      hg38.knownGenePep.name (via knownIsoforms.transcript)
      hg38.knownToEnsembl.name (via knownIsoforms.transcript)
      hg38.knownToGnfAtlas2.name (via knownIsoforms.transcript)
      hg38.knownToHprd.name (via knownIsoforms.transcript)
      hg38.knownToKeggEntrez.name (via knownIsoforms.transcript)
      hg38.knownToLocusLink.name (via knownIsoforms.transcript)
      hg38.knownToLynx.name (via knownIsoforms.transcript)
      hg38.knownToMrna.name (via knownIsoforms.transcript)
      hg38.knownToMrnaSingle.name (via knownIsoforms.transcript)
      hg38.knownToMupit.name (via knownIsoforms.transcript)
      hg38.knownToNextProt.name (via knownIsoforms.transcript)
      hg38.knownToPfam.name (via knownIsoforms.transcript)
      hg38.knownToRefSeq.name (via knownIsoforms.transcript)
      hg38.knownToSuper.gene (via knownIsoforms.transcript)
      hg38.knownToTag.name (via knownIsoforms.transcript)
      hg38.knownToU133.name (via knownIsoforms.transcript)
      hg38.knownToU95.name (via knownIsoforms.transcript)
      hg38.knownToVisiGene.name (via knownIsoforms.transcript)
      hg38.knownToWikipedia.name (via knownIsoforms.transcript)
      hg38.mmBlastTab.query (via knownIsoforms.transcript)
      hg38.rnBlastTab.query (via knownIsoforms.transcript)
      hg38.scBlastTab.query (via knownIsoforms.transcript)
      hg38.ucscScop.ucscId (via knownIsoforms.transcript)

Sample Rows
 
clusterIdtranscript
1ENST00000373020.9
1ENST00000494424.1
1ENST00000496771.5
1ENST00000612152.4
1ENST00000614008.4
10ENST00000341376.11
10ENST00000353205.5
100ENST00000265723.8
100ENST00000359206.8
100ENST00000417608.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.