Schema for ceBlastTab
  Database: hg38    Primary Table: ceBlastTab    Row Count: 4,387   Data last updated: 2022-05-15
Format description: Blast alignments of C. elegans genes
fieldexampleSQL type info description
query ENST00000389231.9varchar(255) values Name of sequence in this assembly (query)
target T27A3.2varchar(255) values Name of sequence in other assembly (target)
identity 34.93float range Percent identity
aliLength 833int(10) unsigned range Length of alignment
mismatch 463int(10) unsigned range Number of mismatches
gapOpen 22int(10) unsigned range Number of gap openings
qStart 18int(10) unsigned range Start in query (0 based)
qEnd 834int(10) unsigned range End in query (non-inclusive)
tStart 18int(10) unsigned range Start in target (0 based)
tEnd 789int(10) unsigned range End in target (non-inclusive)
eValue 6e-132double range Expectation value
bitScore 468double range Bit score

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via ceBlastTab.query)
      hg38.ccdsKgMap.geneId (via ceBlastTab.query)
      hg38.dmBlastTab.query (via ceBlastTab.query)
      hg38.drBlastTab.query (via ceBlastTab.query)
      hg38.foldUtr3.name (via ceBlastTab.query)
      hg38.foldUtr5.name (via ceBlastTab.query)
      hg38.gnfAtlas2Distance.query (via ceBlastTab.query)
      hg38.gnfAtlas2Distance.target (via ceBlastTab.query)
      hg38.gnfU95Distance.query (via ceBlastTab.query)
      hg38.gnfU95Distance.target (via ceBlastTab.query)
      hg38.humanHprdP2P.query (via ceBlastTab.query)
      hg38.humanHprdP2P.target (via ceBlastTab.query)
      hg38.humanVidalP2P.query (via ceBlastTab.query)
      hg38.humanVidalP2P.target (via ceBlastTab.query)
      hg38.humanWankerP2P.query (via ceBlastTab.query)
      hg38.humanWankerP2P.target (via ceBlastTab.query)
      hg38.keggPathway.kgID (via ceBlastTab.query)
      hg38.kgAlias.kgID (via ceBlastTab.query)
      hg38.kgColor.kgID (via ceBlastTab.query)
      hg38.kgProtAlias.kgID (via ceBlastTab.query)
      hg38.kgSpAlias.kgID (via ceBlastTab.query)
      hg38.kgTargetAli.qName (via ceBlastTab.query)
      hg38.kgXref.kgID (via ceBlastTab.query)
      hg38.knownAttrs.kgID (via ceBlastTab.query)
      hg38.knownBlastTab.query (via ceBlastTab.query)
      hg38.knownBlastTab.target (via ceBlastTab.query)
      hg38.knownCanonical.transcript (via ceBlastTab.query)
      hg38.knownCds.name (via ceBlastTab.query)
      hg38.knownGene.name (via ceBlastTab.query)
      hg38.knownGeneMrna.name (via ceBlastTab.query)
      hg38.knownGenePep.name (via ceBlastTab.query)
      hg38.knownIsoforms.transcript (via ceBlastTab.query)
      hg38.knownToEnsembl.name (via ceBlastTab.query)
      hg38.knownToGnfAtlas2.name (via ceBlastTab.query)
      hg38.knownToHprd.name (via ceBlastTab.query)
      hg38.knownToKeggEntrez.name (via ceBlastTab.query)
      hg38.knownToLocusLink.name (via ceBlastTab.query)
      hg38.knownToLynx.name (via ceBlastTab.query)
      hg38.knownToMrna.name (via ceBlastTab.query)
      hg38.knownToMrnaSingle.name (via ceBlastTab.query)
      hg38.knownToMupit.name (via ceBlastTab.query)
      hg38.knownToNextProt.name (via ceBlastTab.query)
      hg38.knownToPfam.name (via ceBlastTab.query)
      hg38.knownToRefSeq.name (via ceBlastTab.query)
      hg38.knownToSuper.gene (via ceBlastTab.query)
      hg38.knownToTag.name (via ceBlastTab.query)
      hg38.knownToU133.name (via ceBlastTab.query)
      hg38.knownToU95.name (via ceBlastTab.query)
      hg38.knownToVisiGene.name (via ceBlastTab.query)
      hg38.knownToWikipedia.name (via ceBlastTab.query)
      hg38.mmBlastTab.query (via ceBlastTab.query)
      hg38.rnBlastTab.query (via ceBlastTab.query)
      hg38.scBlastTab.query (via ceBlastTab.query)
      hg38.ucscScop.ucscId (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENST00000389231.9T27A3.234.938334632218834187896e-132468
ENST00000543111.5T23E7.2e32.9997621153916333074040.00000851.2
ENST00000409122.7Y39A1A.934.117311117409102614341e-1995.5
ENST00000261637.5F18C5.325.58997622191764274054614448e-78290
ENST00000374839.8ZK930.226.1721413251020692150.000000000361.6
ENST00000354619.10Y105E8B.8d44.14242021051460494531e-95347
ENST00000271526.9C39E9.1153.19472114454913584050.00000250.8
ENST00000314163.12Y75B8A.1656.4245218555448104591e-143506
ENST00000285814.9T04A8.635.4214488245185321756e-1887.8
ENST00000361544.11C17G10.4a40.86465258512465184781e-98357

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.