Schema for foldUtr5
  Database: hg19    Primary Table: foldUtr5    Row Count: 59,945   Data last updated: 2013-06-15
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc001aau.3varchar(255) values mRNA accession
seq UUACUGUUGAUUGUGACGAAAUGCCAG...longblob   mRNA sequence (U's instead of T's)
fold ....((((..(((..((......((.....longblob   Parenthesis and .'s that describe folding
energy -78float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via foldUtr5.name)
      hg19.ccdsKgMap.geneId (via foldUtr5.name)
      hg19.ceBlastTab.query (via foldUtr5.name)
      hg19.dmBlastTab.query (via foldUtr5.name)
      hg19.drBlastTab.query (via foldUtr5.name)
      hg19.foldUtr3.name (via foldUtr5.name)
      hg19.gnfAtlas2Distance.query (via foldUtr5.name)
      hg19.gnfAtlas2Distance.target (via foldUtr5.name)
      hg19.gnfU95Distance.query (via foldUtr5.name)
      hg19.gnfU95Distance.target (via foldUtr5.name)
      hg19.humanHprdP2P.query (via foldUtr5.name)
      hg19.humanHprdP2P.target (via foldUtr5.name)
      hg19.humanVidalP2P.query (via foldUtr5.name)
      hg19.humanVidalP2P.target (via foldUtr5.name)
      hg19.humanWankerP2P.query (via foldUtr5.name)
      hg19.humanWankerP2P.target (via foldUtr5.name)
      hg19.keggPathway.kgID (via foldUtr5.name)
      hg19.kgAlias.kgID (via foldUtr5.name)
      hg19.kgColor.kgID (via foldUtr5.name)
      hg19.kgProtAlias.kgID (via foldUtr5.name)
      hg19.kgProtMap2.qName (via foldUtr5.name)
      hg19.kgSpAlias.kgID (via foldUtr5.name)
      hg19.kgTargetAli.qName (via foldUtr5.name)
      hg19.kgTxInfo.name (via foldUtr5.name)
      hg19.kgXref.kgID (via foldUtr5.name)
      hg19.knownBlastTab.query (via foldUtr5.name)
      hg19.knownBlastTab.target (via foldUtr5.name)
      hg19.knownCanonical.transcript (via foldUtr5.name)
      hg19.knownGene.name (via foldUtr5.name)
      hg19.knownGeneMrna.name (via foldUtr5.name)
      hg19.knownGenePep.name (via foldUtr5.name)
      hg19.knownGeneTxMrna.name (via foldUtr5.name)
      hg19.knownGeneTxPep.name (via foldUtr5.name)
      hg19.knownIsoforms.transcript (via foldUtr5.name)
      hg19.knownToAllenBrain.name (via foldUtr5.name)
      hg19.knownToEnsembl.name (via foldUtr5.name)
      hg19.knownToGnfAtlas2.name (via foldUtr5.name)
      hg19.knownToHInv.name (via foldUtr5.name)
      hg19.knownToHprd.name (via foldUtr5.name)
      hg19.knownToKeggEntrez.name (via foldUtr5.name)
      hg19.knownToLocusLink.name (via foldUtr5.name)
      hg19.knownToLynx.name (via foldUtr5.name)
      hg19.knownToMupit.name (via foldUtr5.name)
      hg19.knownToNextProt.name (via foldUtr5.name)
      hg19.knownToPfam.name (via foldUtr5.name)
      hg19.knownToRefSeq.name (via foldUtr5.name)
      hg19.knownToSuper.gene (via foldUtr5.name)
      hg19.knownToTreefam.name (via foldUtr5.name)
      hg19.knownToU133.name (via foldUtr5.name)
      hg19.knownToU133Plus2.name (via foldUtr5.name)
      hg19.knownToU95.name (via foldUtr5.name)
      hg19.knownToVisiGene.name (via foldUtr5.name)
      hg19.knownToWikipedia.name (via foldUtr5.name)
      hg19.mmBlastTab.query (via foldUtr5.name)
      hg19.rnBlastTab.query (via foldUtr5.name)
      hg19.scBlastTab.query (via foldUtr5.name)
      hg19.ucscScop.ucscId (via foldUtr5.name)
      knownGeneV39.bioCycPathway.kgID (via foldUtr5.name)
      knownGeneV39.ceBlastTab.query (via foldUtr5.name)
      knownGeneV39.dmBlastTab.query (via foldUtr5.name)
      knownGeneV39.drBlastTab.query (via foldUtr5.name)
      knownGeneV39.foldUtr3.name (via foldUtr5.name)
      knownGeneV39.foldUtr5.name (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr5.name)
      knownGeneV39.kgAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgColor.kgID (via foldUtr5.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr5.name)
      knownGeneV39.kgXref.kgID (via foldUtr5.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr5.name)
      knownGeneV39.knownBlastTab.query (via foldUtr5.name)
      knownGeneV39.knownBlastTab.target (via foldUtr5.name)
      knownGeneV39.knownCanonical.protein (via foldUtr5.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr5.name)
      knownGeneV39.knownCds.name (via foldUtr5.name)
      knownGeneV39.knownGene.name (via foldUtr5.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr5.name)
      knownGeneV39.knownGenePep.name (via foldUtr5.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr5.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr5.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr5.name)
      knownGeneV39.knownToHprd.name (via foldUtr5.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr5.name)
      knownGeneV39.knownToMrna.name (via foldUtr5.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr5.name)
      knownGeneV39.knownToMupit.name (via foldUtr5.name)
      knownGeneV39.knownToPfam.name (via foldUtr5.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr5.name)
      knownGeneV39.knownToSuper.gene (via foldUtr5.name)
      knownGeneV39.knownToTag.name (via foldUtr5.name)
      knownGeneV39.knownToU133.name (via foldUtr5.name)
      knownGeneV39.knownToU95.name (via foldUtr5.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr5.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr5.name)
      knownGeneV39.mmBlastTab.query (via foldUtr5.name)
      knownGeneV39.rnBlastTab.query (via foldUtr5.name)
      knownGeneV39.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr5.name)

Sample Rows
 
nameseqfoldenergy
uc001aau.3UUACUGUUGAUUGUGACGAAAUGCCAGCUGAGGCACAUGCCUUGGGAGCUAAGUGGUUGCUGCCCUUGACCACUGUGAAGACUGGUGUGGGAAGGGUCGCUUUGGAUGCACUUGAGCAGGGGUCCCCA .......((((..(((..((......((..(..((((....))))..)..(((((((((((((.((((((..((((.((....))....)))).)))))).))....))).))))).))).))((((((.. ...-78
uc001abe.4UUACUGUUGAUUGUGACGAAAUGCCAGCUGAGGCACAUGCCUUGGGAGCUAAGUGGUUGCUGCCCUUGACCACUGUGAAGACUGGUGUGGGAAGGGUCGCUUUGGAUGCACUUGAGCAGGGGUCCCCA ........((((((((.((.((((.(((.((((.(((.....(((((.(.(((..(((((.((.((((((..((((.((....))....)))).)))))).))................(((((((..... ...-102.52
uc001abv.1CAGCGCUUGGGGCUCGCGGGCCGCUCCCUCCGCUCGGAAGGGAAAAGUCUGAAGACGCUU.(((((((.(((((.(((...)))(((((((....)).)))))..))))).))).)))).-24.3
uc001abw.1GCAGAUCCCUGCGGCGUUCGCGAGGGUGGGACGGGAAGCGGGCUGGGAAGUCGGGCCGAGGGAAAAGUCUGAAGACGCUU.(((((((((.((((.(((.((.........)).)))...((((....))))..)))))))))....)))).........-25.2
uc001abx.2GGAAAAGUCUGAAGACGCUU......(((....)))....-2.6
uc001aby.4GUGGCUCACGCCUGUAAUGCCAGCACUUUGGGAGGCCGAGGCGGGCAGAUUACCUGAGGUCAGGAAUUCGAGACCAGCCUGACCAACACGGAAAAAUCAUGUCUCUACUAAAAAUAUAAAAAUUAGCC ...((((((.((.(((((..((((.((.((..(((..((....)).(((......(((((((((.((((.((....(((((((..(((((........((((((((((((((...............(((( ...-847.62
uc001abz.4GUGCGCAGCCGCGCGGCAUUCUGGGGCCGGAAGUGGGGUGCACGCUUCGGGUUGGUGUC((((((..((((.((((........))))...)))).)))))).(....).........-23.5
uc001aca.2AGUGAGCGACACAGAGCGGGCCGCCACCGCCGAGCAGCCCUCCGGCAGUCUCCGCGUCCGUUAAGCCCGCGGGUCCUCCGCGAAUCGGCGGUGGGUCCGGCAGCCGA.(((.....))).(.((..((((((((((((((...((.....((.((..((((((..(.....)..))))))..))))))...))))))))))...)))).)))..-48.5
uc001acb.1CGGCCUCCUGUGCGACAUCGUCCUGCACGUGGCUGCCAAGGAGAUCCGUGCGCACAAAGUGGUGCUGGCCUCCUGCAGCCCCUACUUCCACGCCAUGUUCACAAGCAAGUACCCGCCUGGGCGGCGCU ....(((.....(((((((...)))..))))..((((((..(((((..(.(..(.(((...))))..).)..)))))))))))...........)))....(((...........((((....)))).((. ...-75.2
uc001acd.3GGGACCCAGACUUGCCGACCUGUACGACUCUGGCC.....(((((.(((..........))).)))))..-6.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.